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RNA-dependent_RNA_polymerase
Euk-VirEthiopian_tobacco_bushy_top_virus
RNA-dependent_RNA_polymerase__YP_009056849__Ethiopian_tobacco_bushy_top_virus__1538549
Identity
- Accession:
- YP_009056849 ↗
- Protein ID:
- RNA-dependent_RNA_polymerase
- Kingdom:
- euk
Quality
77.3
mean pLDDT
Cluster
View cluster (58 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-32_34-55
Domain cluster:
rep: hypothetical_protein_1__YP_009337296__Changjiang_tombus-like_virus_3__1922817__D1-56
D2
high
residues 220-285
Domain cluster:
rep: RNA-dependent_RNA_polymerase__YP_002302259__Carrot_mottle_virus__68033__D254-317
D3
medium
residues 287-382
Domain cluster:
rep: replicase__NP_620846__Pea_enation_mosaic_virus_2__193120__D300-380
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00998.29 best | RdRP_3 | 32.5 | 5.70e-08 | 70.8% | 13.0% |
D4
medium
residues 383-448_450-490_524-589
Domain cluster:
rep: hypothetical_protein_2__YP_009337190__Wenling_tombus-like_virus_2__1923544__D9-107_145-194
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00998.29 best | RdRP_3 | 103.3 | 1.90e-29 | 63.6% | 21.4% |
| PF00998.29 | RdRP_3 | 86.0 | 3.50e-24 | 39.3% | 13.8% |
D5
medium
residues 491-523_590-643_645-670
Domain cluster:
rep: hypothetical_protein_1__YP_009337274__Changjiang_tombus-like_virus_14__1922807__D158-196_253-344
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00998.29 best | RdRP_3 | 90.4 | 1.60e-25 | 70.8% | 16.5% |
| PF00998.29 | RdRP_3 | 42.4 | 5.70e-11 | 31.9% | 6.8% |
D6
medium
residues 671-806
Domain cluster:
rep: hypothetical_protein_2__YP_009336956__Hubei_tombus-like_virus_11__1923257__D331-462
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00998.29 best | RdRP_3 | 62.3 | 5.50e-17 | 84.6% | 23.5% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3zssA02 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.55 | 27.0 | 3.41e-01 | 87.5% | 78.5% |
| 2b0hA01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.54 | 38.0 | 3.93e-01 | 100.0% | 76.6% |
| 1n5uA05 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.53 | 27.0 | 2.99e-01 | 83.8% | 58.0% |
| 2iw3A02 | 1.20.1390.20 | Mainly Alpha › Up-down Bundle › PWI domain › | 0.52 | 26.0 | 3.07e-01 | 93.4% | 67.8% |