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RNA-dependent_RNA_polymerase

Euk-Vir

Opium_poppy_mosaic_virus

RNA-dependent_RNA_polymerase__YP_009162614__Opium_poppy_mosaic_virus__473784

Identity

Accession:: YP_009162614 ↗
Protein ID:: RNA-dependent_RNA_polymerase
Kingdom:: euk

Quality

75.7 mean pLDDT

Cluster

View cluster (58 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-65

PDB

D2 medium residues 134-161_237-311

PDB

D3 medium residues 312-393_456-470

PDB

Domain cluster: rep: replicase__NP_620846__Pea_enation_mosaic_virus_2__193120__D300-380

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	31.9	8.90e-08	60.8%	11.3%

D4 medium residues 471-525_545-603

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009337432__Changjiang_tombus-like_virus_5__1922819__D23-82_137-181

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	68.7	6.20e-19	52.6%	12.3%
PF00998.29	RdRP_3	51.8	8.30e-14	49.1%	11.3%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2r7rA05	1.10.357.80	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 ›	0.62	57.0	4.88e-01	99.1%	97.7%
2zihC00	1.10.3630.10	Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like	0.53	36.0	2.78e-01	71.1%	68.5%
4k59A00	2.60.40.4380	Mainly Beta › Sandwich › Immunoglobulin-like › Translational regulator CsrA	0.53	22.0	2.84e-01	97.4%	63.6%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3939572	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.67	52.0	4.21e-01	84.2%	52.4%
4000800	109.10.1.1 ↗	alpha superhelices › Repetitive alpha hairpins › Translin › Translin › Translin	0.58	34.0	3.06e-01	94.7%	39.4%
3936891	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.55	31.0	3.38e-01	92.1%	64.2%
3810002	101.1.2.111 ↗	alpha arrays › HTH › HTH › winged helix domain › RQC	0.55	32.0	3.32e-01	93.9%	58.2%
3240179	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.54	33.0	3.45e-01	93.9%	63.8%
3581762	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.54	32.0	3.30e-01	93.9%	60.0%
3758301	103.1.1.94 ↗	alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › PF26112	0.53	29.0	2.64e-01	93.9%	37.4%
4946426	3241.1.1.0 ↗	alpha arrays › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 › Golgi phosphoprotein 3	0.53	37.0	3.03e-01	71.1%	72.1%
4881239	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.53	21.0	2.65e-01	92.1%	53.7%
3270569	563.1.1.1 ↗	alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP	0.51	38.0	3.29e-01	96.5%	47.9%
4025104	101.1.2.122 ↗	alpha arrays › HTH › HTH › winged helix domain › CSN8_PSD8_EIF3K	0.50	24.0	2.72e-01	94.7%	57.5%

D5 medium residues 526-544_604-679

PDB

Domain cluster: rep: IMGVR_UViG_3300016457_001358-3300016457-Ga0186713_11630063__D4-82

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	97.4	1.20e-27	80.0%	15.6%

D6 medium residues 680-803

PDB

Domain cluster: rep: P95_replicase__YP_009259667__Pelargonium_leaf_curl_virus__35280__D527-559_693-852

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	81.9	5.90e-23	100.0%	26.8%