RNA-dependent_RNA_polymerase

Euk-Vir

Potato_necrosis_virus

RNA-dependent_RNA_polymerase__YP_009246408__Potato_necrosis_virus__1725329

Identity

86.1 mean pLDDT

View cluster (58 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 218-282_341-380_459-507

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase_3D__NP_740737__Parechovirus_A__1803956__D11-60_159-185_260-299

Pfam (3)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	41.4	1.10e-10	39.0%	11.7%
PF00998.29	RdRP_3	76.8	2.20e-21	32.5%	10.1%
PF00998.29	RdRP_3	55.7	5.20e-15	31.2%	8.4%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1173784	304.48.1.8 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1	0.73	68.0	5.01e-01	98.1%	82.4%
3521725	327.11.2.55 ↗	a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF26774	0.52	20.0	2.60e-01	83.1%	55.3%

D2 medium residues 283-340_381-396

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	38.9	6.70e-10	93.2%	12.1%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
8b9zK01	1.10.287.3510	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.57	33.0	3.14e-01	86.5%	47.3%
2pohA02	6.10.140.940	Special › Helix non-globular › Helix Hairpins ›	0.53	26.0	2.63e-01	75.7%	42.9%
3fb2A01	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.52	32.0	2.88e-01	81.1%	44.8%

D3 medium residues 397-458_508-585

PDB

Domain cluster: rep: hypothetical_protein_1__YP_009337274__Changjiang_tombus-like_virus_14__1922807__D158-196_253-344

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	103.1	2.20e-29	56.4%	15.4%
PF00998.29	RdRP_3	91.8	5.80e-26	51.4%	13.4%

D4 medium residues 586-705

PDB

Domain cluster: rep: P95_replicase__YP_009259667__Pelargonium_leaf_curl_virus__35280__D527-559_693-852

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	100.5	1.40e-28	98.3%	24.9%