←Back to structures
RNA-dependent_RNA_polymerase
Euk-VirSclerotinia_nivalis_victorivirus_1
RNA-dependent_RNA_polymerase__YP_009259368__Sclerotinia_nivalis_victorivirus_1__1859161
Identity
- Accession:
- YP_009259368 ↗
- Protein ID:
- RNA-dependent_RNA_polymerase
- Kingdom:
- euk
Quality
92.0
mean pLDDT
Cluster
View cluster (56 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-76
Domain cluster:
rep: RNA-dependent_RNA_polymerase__YP_009072433__Botryosphaeria_dothidea_victorivirus_1__1547580__D1-88
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1sy7A02 | 1.20.1370.20 | Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › Catalase, four-helical domain | 0.70 | 47.0 | 4.99e-01 | 74.3% | 79.7% |
| 3n4eA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.63 | 51.0 | 4.62e-01 | 91.9% | 85.6% |
| 1gq1A01 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.62 | 49.0 | 4.48e-01 | 87.8% | 94.0% |
| 2og9A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.59 | 47.0 | 4.01e-01 | 91.9% | 75.4% |
| 6b8hO01 | 1.10.520.20 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase | 0.56 | 44.0 | 4.11e-01 | 90.5% | 74.7% |
| 4i2aA01 | 1.10.150.110 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like | 0.50 | 40.0 | 3.79e-01 | 91.9% | 71.3% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4806339 | 3821.1.1.2 ↗ | a+b complex topology › CRISPR-associated endonuclease Cas9 beta-hairpin domain › CRISPR-associated endonuclease Cas9 beta-hairpin domain › CRISPR-associated endonuclease Cas9 beta-hairpin domain › Cas9_C | 0.53 | 30.0 | 3.02e-01 | 83.8% | 51.9% |
| 4074074 | 3457.1.1.1 ↗ | alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Peptidase_A24 | 0.50 | 40.0 | 2.91e-01 | 90.5% | 38.6% |
D2
high
residues 592-664_727-752_797-831
Domain cluster:
rep: RNA-dependent_RNA_polymerase__YP_009272905__Fusarium_poae_victorivirus_1__1849535__D612-657_720-746_792-827
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2lfhA00 | 4.10.280.10 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain | 0.56 | 22.0 | 3.00e-01 | 93.3% | 67.6% |
| 4evfA01 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.55 | 26.0 | 3.33e-01 | 82.1% | 78.9% |
| 2riqA01 | 1.10.20.130 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › | 0.53 | 19.0 | 2.72e-01 | 89.6% | 65.2% |
D3
medium
residues 77-259
Domain cluster:
rep: RNA-dependent_RNA_polymerase__NP_624323__Trichomonas_vaginalis_virus_2__674954__D796-923
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02123.22 best | RdRP_4 | 34.2 | 2.00e-08 | 78.1% | 29.0% |
D4
medium
residues 260-301_432-484
Domain cluster:
rep: RNA_directed_RNA_polymerase__YP_009094185__Ustilaginoidea_virens_RNA_virus_L__1561171__D256-290_421-459_472-493
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02123.22 best | RdRP_4 | 24.7 | 1.50e-05 | 56.8% | 12.0% |
D5
medium
residues 302-391
Domain cluster:
rep: RNA_dependent_RNA_polymerase__YP_009508249__Aspergillus_foetidus_slow_virus_1__1087070__D246-258_309-387
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02123.22 best | RdRP_4 | 69.7 | 3.40e-19 | 100.0% | 18.7% |
D6
medium
residues 392-431_485-575
Domain cluster:
rep: KR816341.1__AKQ06880.1__X__00021__D162-195_238-325
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02123.22 best | RdRP_4 | 105.9 | 3.60e-30 | 70.2% | 19.1% |
| PF02123.22 | RdRP_4 | 32.5 | 6.40e-08 | 32.1% | 8.6% |
D7
medium
residues 665-726
Domain cluster:
rep: RNA-dependent_RNA_polymerase__YP_009552778__Fusarium_asiaticum_victorivirus_1__2268743__D676-732
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3pm8B01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.53 | 36.0 | 3.28e-01 | 71.0% | 78.6% |