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RNA-dependent_RNA_polymerase

Euk-Vir

Cronartium_ribicola_mitovirus_5

RNA-dependent_RNA_polymerase__YP_009259487__Cronartium_ribicola_mitovirus_5__1816488

Identity

Accession:: YP_009259487 ↗
Protein ID:: RNA-dependent_RNA_polymerase
Kingdom:: euk

Quality

69.8 mean pLDDT

Taxonomy

Orthornavirae› Lenarviricota› Howeltoviricetes› Cryppavirales› Mitoviridae› Unuamitovirus› Cronartium_ribicola_mitovirus_5

TaxID: 1816488

Cluster

View cluster (39 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-144

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009465715__Erysiphe_necator_mitovirus_1__2052561__D5-113

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1abvA00	1.10.520.20	Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase	0.53	36.0	4.13e-01	70.8%	96.2%
2xq0A03	1.10.390.10	Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2	0.53	35.0	3.44e-01	85.4%	61.8%
4ceiA03	6.10.250.2380	Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.52	35.0	3.85e-01	78.5%	86.6%
1bvyB00	1.10.630.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450	0.50	43.0	3.08e-01	93.8%	77.4%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4854884	4963.1.2.1 ↗	alpha complex topology › N-terminal additional helical subdomain in reovirus polymerase lambda3 › N-terminal additional helical subdomain in reovirus polymerase lambda3 › N-terminal domain in vesicular stomatitis virus RNA polymerase L › Mononeg_RNA_pol	0.72	58.0	5.47e-01	84.7%	86.1%
3242414	174.1.1.66 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › PF29806	0.57	43.0	4.55e-01	79.2%	94.6%
4929535	604.5.1.2 ↗	alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU	0.55	48.0	4.14e-01	91.7%	84.6%
3220023	174.1.1.0 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain	0.55	42.0	4.16e-01	80.6%	84.0%
3253573	593.1.1.0 ↗	alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like	0.53	43.0	3.56e-01	88.2%	74.7%
3798462	106.1.1.0 ↗	alpha arrays › Globin-like › Globin-like › Globin-like	0.52	40.0	3.78e-01	83.3%	66.9%
3855979	5050.1.1.1 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr	0.51	36.0	3.02e-01	70.8%	76.7%
3242470	174.1.1.0 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain	0.51	39.0	3.60e-01	79.2%	77.3%
3812703	3758.1.1.7 ↗	alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › BPS1	0.50	40.0	3.50e-01	85.4%	95.1%

D2 medium residues 145-166_297-461

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009337040__Changjiang_tombus-like_virus_21__1922815__D1-47_99-181

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05919.17 best	Mitovir_RNA_pol	220.0	9.70e-65	97.3%	32.8%

D3 medium residues 167-296

PDB

Domain cluster: rep: putative_RNA-dependent_RNA_polymerase__YP_009249807__Rhizoctonia_oryzae-sativae_mitovirus_1__1837089__D175-218_233-338

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05919.17 best	Mitovir_RNA_pol	46.3	4.50e-12	93.8%	23.7%

D4 medium residues 462-590

PDB

D5 medium residues 644-747

PDB