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RNA-dependent_RNA_polymerase

Euk-Vir

Fusarium_poae_mitovirus_3

RNA-dependent_RNA_polymerase__YP_009272900__Fusarium_poae_mitovirus_3__1848152

Identity

Accession:
YP_009272900 ↗
Protein ID:
RNA-dependent_RNA_polymerase
Kingdom:
euk

Quality

65.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D2 high residues 171-348_365-455
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05919.17 best Mitovir_RNA_pol 175.2 3.80e-51 90.3% 46.7%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1mukA02 3.90.1850.10 Alpha Beta › Alpha-Beta Complex › RNA-directed RNA polymerase lambda-3 › RNA-directed RNA polymerase lambda-3 0.63 60.0 4.76e-01 100.0% 66.1%
2r7rA05 1.10.357.80 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.61 38.0 4.69e-01 88.1% 94.9%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3983816 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.68 48.0 4.97e-01 82.9% 75.6%
1411401 304.48.1.7 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Flu_PB1 0.68 64.0 5.21e-01 100.0% 73.7%
4859811 304.48.1.7 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Flu_PB1 0.68 64.0 5.34e-01 100.0% 73.3%
1695458 304.48.1.7 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Flu_PB1 0.67 63.0 5.18e-01 100.0% 75.6%
4937067 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.63 48.0 4.92e-01 91.8% 78.9%
5368 304.48.1.23 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_5 0.63 60.0 5.19e-01 100.0% 85.1%
3945039 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.63 53.0 4.93e-01 94.4% 71.5%
4901747 304.48.1.76 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › PF29845 0.62 47.0 4.88e-01 89.6% 80.7%
3574984 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.62 57.0 5.00e-01 100.0% 68.5%
4152428 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.62 52.0 4.66e-01 89.6% 65.6%
4872037 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.62 48.0 4.84e-01 93.3% 80.1%
3693017 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.62 58.0 5.17e-01 100.0% 83.5%
223786 304.48.1.16 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_4 0.61 58.0 5.40e-01 99.3% 85.4%
4019374 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.61 58.0 4.98e-01 100.0% 76.8%
4497954 304.48.1.73 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1, RVT_N 0.61 53.0 5.07e-01 94.1% 78.4%
5018583 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.61 53.0 5.00e-01 94.1% 76.8%
3589612 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.60 54.0 5.05e-01 94.1% 82.4%
4070164 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.60 47.0 4.20e-01 97.0% 58.9%
4262041 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.60 43.0 4.45e-01 91.1% 75.7%
3645993 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.60 54.0 4.72e-01 100.0% 65.5%
3923013 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.60 57.0 5.20e-01 100.0% 78.0%
3173834 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.60 54.0 4.59e-01 93.7% 68.5%
5002351 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.60 51.0 4.57e-01 94.1% 64.5%
4004424 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.60 54.0 4.74e-01 94.1% 71.5%
5029718 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.60 49.0 4.50e-01 91.1% 67.1%
1827765 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.59 48.0 4.68e-01 91.8% 76.2%
3209439 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.59 55.0 5.15e-01 100.0% 81.9%
4461237 4967.1.1.0 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.59 53.0 4.20e-01 94.1% 57.3%
1697857 304.48.1.30 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › CPV_RdRP_pol_dom 0.58 55.0 5.05e-01 100.0% 83.8%
3097450 304.48.1.12 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Mononeg_RNA_pol 0.58 55.0 4.78e-01 100.0% 84.1%
5078830 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.57 47.0 4.74e-01 87.7% 84.9%
4138932 304.48.1.72 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_N 0.57 46.0 4.41e-01 93.3% 74.3%
4068028 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.55 44.0 4.35e-01 91.1% 76.6%
3226328 509.1.1.1 alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.53 19.0 3.29e-01 80.7% 95.6%
4236458 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.53 47.0 4.40e-01 93.3% 78.4%
5018572 304.48.1.72 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_N 0.52 31.0 3.74e-01 84.8% 86.7%
D3 high residues 644-705
PDB
D4 medium residues 349-364_456-509
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05919.17 best Mitovir_RNA_pol 64.8 1.10e-17 78.6% 9.7%
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hkqA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.79 72.0 5.61e-01 100.0% 72.2%
4ol8A01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.75 66.0 5.31e-01 98.6% 69.6%
1ra6A02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.67 50.0 4.37e-01 80.0% 86.8%
3tzyA02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.65 45.0 4.55e-01 72.9% 92.9%
2r7kA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.62 44.0 4.65e-01 91.4% 85.2%
4mz0B05 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.60 45.0 4.66e-01 81.4% 100.0%
3viuA04 3.90.650.10 Alpha Beta › Alpha-Beta Complex › Phosphoribosyl-aminoimidazole Synthetase; Chain A, domain 2 › PurM-like C-terminal domain 0.58 51.0 3.87e-01 100.0% 85.0%
8c46A01 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 49.0 4.16e-01 94.3% 99.1%
1wr2A02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.55 42.0 4.13e-01 84.3% 80.8%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.51 40.0 3.96e-01 98.6% 82.9%
1zd0A01 3.30.2380.10 Alpha Beta › 2-Layer Sandwich › PF0523-like › CGI121/TPRKB 0.50 43.0 3.59e-01 100.0% 96.9%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3810170 304.48.1.43 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Mitovir_RNA_pol 0.97 94.0 6.59e-01 100.0% 87.8%
3336938 304.48.1.43 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Mitovir_RNA_pol 0.97 93.0 6.03e-01 100.0% 62.4%
3306901 304.48.1.43 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Mitovir_RNA_pol 0.95 91.0 6.58e-01 100.0% 86.1%
3939861 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.79 71.0 5.84e-01 97.1% 89.2%
3927365 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.79 72.0 4.85e-01 100.0% 51.0%
3571315 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.79 71.0 4.84e-01 100.0% 58.3%
3926633 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.78 71.0 5.14e-01 100.0% 67.0%
4004424 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.77 68.0 4.28e-01 100.0% 52.0%
3933633 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.77 69.0 4.65e-01 100.0% 48.1%
3934891 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.77 69.0 4.73e-01 100.0% 53.8%
3934202 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.77 69.0 5.40e-01 100.0% 92.4%
4118693 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.71 52.0 5.07e-01 77.1% 97.3%
3510118 4076.1.1.0 a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like 0.70 49.0 5.34e-01 87.1% 92.7%
3315278 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.70 60.0 4.99e-01 95.7% 82.4%
5040784 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.69 48.0 5.51e-01 77.1% 100.0%
4642338 807.1.1.1 a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › CpcD 0.69 49.0 5.56e-01 80.0% 100.0%
3535929 386.1.1.248 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_ZNF592 0.68 45.0 3.36e-01 80.0% 26.9%
3859590 386.1.1.248 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_ZNF592 0.68 45.0 5.06e-01 94.3% 96.0%
4957296 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.62 45.0 4.52e-01 75.7% 100.0%
4976568 304.111.1.0 a+b two layers › Alpha-beta plaits › PurM C-terminal domain-like › PurM C-terminal domain-like 0.62 56.0 4.06e-01 100.0% 80.0%
4974693 304.111.1.0 a+b two layers › Alpha-beta plaits › PurM C-terminal domain-like › PurM C-terminal domain-like 0.61 55.0 4.17e-01 100.0% 75.8%
3993141 304.7.1.1 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Propep_M14 0.61 51.0 4.85e-01 92.9% 89.4%
3946828 304.11.1.0 a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.58 44.0 4.55e-01 81.4% 98.5%
3945340 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.58 46.0 3.59e-01 85.7% 76.7%
5022444 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.57 49.0 4.71e-01 95.7% 88.7%
4951601 304.24.1.37 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › MCR_C 0.56 41.0 4.21e-01 77.1% 100.0%
3784880 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.56 48.0 4.51e-01 97.1% 97.6%
4013514 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.55 44.0 3.92e-01 98.6% 60.0%
5049225 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.54 37.0 2.95e-01 74.3% 99.4%
4499818 221.4.1.9 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX_4 0.53 42.0 3.67e-01 90.0% 97.4%
5030137 2003.1.1.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Gp_dh_N 0.53 37.0 2.87e-01 75.7% 52.4%
4952910 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.52 45.0 4.07e-01 100.0% 98.0%
D5 medium residues 510-590
PDB