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RNA-dependent_RNA_polymerase
Euk-VirFusarium_poae_narnavirus_2
RNA-dependent_RNA_polymerase__YP_009272903__Fusarium_poae_narnavirus_2__1849532
Identity
- Accession:
- YP_009272903 ↗
- Protein ID:
- RNA-dependent_RNA_polymerase
- Kingdom:
- euk
Quality
48.8
mean pLDDT
Taxonomy
Orthornavirae›
Lenarviricota›
Amabiliviricetes›
Wolframvirales›
Narnaviridae›
Narnavirus›
Fusarium_poae_narnavirus_2
TaxID: 1849532
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 446-472_541-598
Domain cluster:
rep: RNA-dependent_RNA_polymerase__YP_009336518__Wenzhou_narna-like_virus_2__1923577__D318-359_395-457
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.62 | 29.0 | 2.79e-01 | 72.9% | 39.4% |
| 1wpbG01 | 1.10.287.680 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.55 | 34.0 | 4.03e-01 | 78.8% | 96.3% |
| 4mbsA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.52 | 39.0 | 2.65e-01 | 81.2% | 92.5% |
| 3bemB00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.51 | 36.0 | 2.72e-01 | 74.1% | 45.0% |
| 4ftfA00 | 3.30.300.250 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.50 | 38.0 | 3.57e-01 | 95.3% | 64.2% |
| 7uzsX02 | 3.90.260.10 | Alpha Beta › Alpha-Beta Complex › Coagulation Factor XIII; Chain A, domain 2 › Transglutaminase-like | 0.50 | 41.0 | 2.96e-01 | 94.1% | 36.9% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3236725 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.70 | 62.0 | 4.40e-01 | 98.8% | 55.8% |
| 3465998 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.70 | 62.0 | 4.27e-01 | 100.0% | 52.8% |
| 3792091 | 304.48.1.25 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RRM_4 | 0.69 | 62.0 | 4.06e-01 | 97.6% | 35.7% |
| 3669721 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.69 | 62.0 | 4.23e-01 | 100.0% | 67.0% |
| 3960648 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.67 | 59.0 | 4.00e-01 | 97.6% | 50.8% |
| 4990927 | 10.28.1.1 ↗ | beta sandwiches › jelly-roll › Jelly-roll domain in Zinc finger protein ZPR1 › Jelly-roll domain in Zinc finger protein ZPR1 › jr-ZPR1 | 0.55 | 38.0 | 3.42e-01 | 72.9% | 90.4% |
| 3241726 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.53 | 40.0 | 2.77e-01 | 82.4% | 78.8% |
| 1228497 | 219.1.1.13 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core | 0.53 | 43.0 | 2.99e-01 | 91.8% | 36.1% |
| 5026144 | 1075.1.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain | 0.53 | 39.0 | 2.87e-01 | 78.8% | 85.5% |
| 7522 | 323.1.1.6 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Carn_acyltransf | 0.53 | 44.0 | 3.35e-01 | 92.9% | 63.8% |
| 3848944 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 44.0 | 2.88e-01 | 97.6% | 47.1% |
| 3259532 | 167.1.1.1 ↗ | alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7 | 0.51 | 36.0 | 3.04e-01 | 72.9% | 55.3% |
| 4934384 | 101.1.2.947 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF27234 | 0.51 | 34.0 | 3.49e-01 | 80.0% | 68.2% |
| 4317544 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.50 | 38.0 | 3.61e-01 | 95.3% | 68.0% |
| 3802871 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.50 | 34.0 | 3.21e-01 | 70.6% | 100.0% |