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RNA-dependent_RNA_polymerase
Euk-VirBeihai_sphaeromadae_virus_3
RNA-dependent_RNA_polymerase__YP_009329890__Beihai_sphaeromadae_virus_3__1922709
Identity
- Accession:
- YP_009329890 ↗
- Protein ID:
- RNA-dependent_RNA_polymerase
- Kingdom:
- euk
Quality
78.4
mean pLDDT
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 67-227_270-293
Domain cluster:
rep: RNA-dependent_RNA_polymerase__YP_009337879__Hubei_noda-like_virus_9__1922989__D136-259_287-345
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19222.6 best | Noda_Vmethyltr | 186.7 | 2.80e-55 | 79.5% | 95.3% |
D2
medium
residues 324-403
Domain cluster:
rep: hypothetical_protein__YP_009336769__Hubei_diptera_virus_16__1922877__D264-353
CATH (46)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vqcA00 | 1.10.10.1470 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › F-112 protein-like | 0.71 | 44.0 | 4.68e-01 | 76.2% | 71.4% |
| 2cfxA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 43.0 | 5.08e-01 | 90.0% | 98.0% |
| 4a0zA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 41.0 | 4.66e-01 | 81.2% | 79.7% |
| 3iuoA00 | 1.10.10.1390 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ATP-dependent DNA helicase RecQ | 0.69 | 47.0 | 4.22e-01 | 88.7% | 51.4% |
| 5dukB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 43.0 | 4.58e-01 | 88.7% | 76.1% |
| 4kmfA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 41.0 | 4.49e-01 | 77.5% | 77.4% |
| 2dbbB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 41.0 | 4.66e-01 | 87.5% | 87.3% |
| 2j5oA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 43.0 | 4.61e-01 | 71.2% | 80.0% |
| 3cuqB03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 41.0 | 4.33e-01 | 82.5% | 71.0% |
| 4p78C00 | 3.30.920.30 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. | 0.66 | 40.0 | 4.37e-01 | 82.5% | 74.2% |
| 2dn0A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.66 | 43.0 | 4.44e-01 | 92.5% | 71.1% |
| 3lmmC04 | 1.10.10.2340 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.65 | 42.0 | 4.09e-01 | 91.3% | 59.8% |
| 2rajA02 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.64 | 46.0 | 3.96e-01 | 76.2% | 90.5% |
| 1dz1A00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.63 | 37.0 | 3.99e-01 | 96.2% | 67.1% |
| 1u8bA02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.62 | 42.0 | 4.72e-01 | 78.8% | 93.4% |
| 4bxoA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.62 | 41.0 | 4.40e-01 | 75.0% | 80.6% |
| 1xteA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.62 | 46.0 | 4.06e-01 | 78.8% | 90.5% |
| 2ld5A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.62 | 42.0 | 4.47e-01 | 91.3% | 83.6% |
| 1u2wD00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 42.0 | 4.00e-01 | 90.0% | 60.6% |
| 4oxwA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.59 | 44.0 | 4.07e-01 | 80.0% | 97.2% |
| 3vfzB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 36.0 | 3.90e-01 | 80.0% | 74.6% |
| 2f9wA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.59 | 39.0 | 3.35e-01 | 100.0% | 41.2% |
| 2pjpA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 41.0 | 4.59e-01 | 86.3% | 100.0% |
| 1lnwF01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 45.0 | 3.90e-01 | 83.7% | 66.1% |
| 1z1vA00 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.57 | 40.0 | 4.29e-01 | 76.2% | 84.3% |
| 3bddD00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 44.0 | 3.77e-01 | 83.7% | 57.6% |
| 2yvkA01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.57 | 47.0 | 3.81e-01 | 90.0% | 60.1% |
| 2jo6A00 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.55 | 39.0 | 3.55e-01 | 75.0% | 71.8% |
| 4a18P00 | 3.30.720.90 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.55 | 34.0 | 3.64e-01 | 98.8% | 74.2% |
| 3t0yA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 32.0 | 3.56e-01 | 77.5% | 75.0% |
| 3k6qA02 | 3.30.160.620 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.55 | 47.0 | 4.63e-01 | 98.8% | 97.8% |
| 3e6mA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 42.0 | 3.46e-01 | 82.5% | 51.4% |
| 1ornA01 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.55 | 44.0 | 4.05e-01 | 92.5% | 99.1% |
| 1aisB02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.54 | 36.0 | 3.47e-01 | 90.0% | 58.5% |
| 1t5oA01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.53 | 42.0 | 3.58e-01 | 88.7% | 63.1% |
| 1azpA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.53 | 31.0 | 3.36e-01 | 98.8% | 68.2% |
| 3bj6B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 40.0 | 3.30e-01 | 82.5% | 56.3% |
| 1zarA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 43.0 | 4.24e-01 | 92.5% | 84.3% |
| 4rs8A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 40.0 | 3.95e-01 | 82.5% | 86.9% |
| 2r41A00 | 3.10.450.150 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein | 0.52 | 35.0 | 3.23e-01 | 95.0% | 53.4% |
| 4ljiB00 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.52 | 43.0 | 3.69e-01 | 91.3% | 89.3% |
| 7essA01 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.52 | 36.0 | 3.10e-01 | 100.0% | 43.9% |
| 2a6cA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.52 | 33.0 | 3.38e-01 | 92.5% | 65.8% |
| 2a0uB01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.52 | 43.0 | 3.48e-01 | 92.5% | 56.2% |
| 2qxlB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 39.0 | 3.35e-01 | 100.0% | 50.0% |
| 1ub9A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 39.0 | 3.68e-01 | 86.3% | 80.0% |
ECOD (71)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3238342 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.78 | 47.0 | 3.37e-01 | 100.0% | 22.3% |
| 3706831 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.74 | 61.0 | 6.16e-01 | 87.5% | 92.5% |
| 3397887 | 101.1.1.28 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › SWIRM | 0.72 | 53.0 | 5.66e-01 | 90.0% | 88.6% |
| 3938255 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.72 | 44.0 | 3.08e-01 | 100.0% | 20.4% |
| 3244316 | 101.1.1.67 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_6 | 0.72 | 43.0 | 4.70e-01 | 76.2% | 73.8% |
| 4505585 | 101.1.2.22 ↗ | alpha arrays › HTH › HTH › winged helix domain › PCI | 0.70 | 45.0 | 4.25e-01 | 85.0% | 53.0% |
| 3795794 | 101.1.2.22 ↗ | alpha arrays › HTH › HTH › winged helix domain › PCI | 0.69 | 46.0 | 4.84e-01 | 83.7% | 77.1% |
| 5003077 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.69 | 45.0 | 4.74e-01 | 86.3% | 75.7% |
| 4933539 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.69 | 41.0 | 2.98e-01 | 71.2% | 21.9% |
| 3557944 | 101.1.2.22 ↗ | alpha arrays › HTH › HTH › winged helix domain › PCI | 0.68 | 44.0 | 4.60e-01 | 83.7% | 70.7% |
| 5058767 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.68 | 40.0 | 4.51e-01 | 87.5% | 78.3% |
| 5072420 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 42.0 | 4.93e-01 | 90.0% | 100.0% |
| 3992134 | 101.1.2.22 ↗ | alpha arrays › HTH › HTH › winged helix domain › PCI | 0.68 | 44.0 | 4.76e-01 | 83.7% | 81.5% |
| 4895784 | 101.1.2.623 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF25983 | 0.67 | 46.0 | 4.98e-01 | 83.7% | 85.1% |
| 5078072 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.67 | 42.0 | 4.55e-01 | 90.0% | 76.9% |
| 3969402 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 43.0 | 3.97e-01 | 81.2% | 49.5% |
| 5046294 | 101.1.2.140 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type | 0.67 | 41.0 | 4.61e-01 | 90.0% | 87.3% |
| 4961224 | 101.1.2.78 ↗ | alpha arrays › HTH › HTH › winged helix domain › AlkZ-like | 0.67 | 40.0 | 4.26e-01 | 85.0% | 67.1% |
| 4975570 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 40.0 | 4.61e-01 | 86.3% | 87.3% |
| 5032601 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.66 | 41.0 | 4.68e-01 | 86.3% | 90.9% |
| 3942897 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 44.0 | 4.42e-01 | 86.3% | 67.5% |
| 4971365 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 39.0 | 4.51e-01 | 86.3% | 85.5% |
| 4439631 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.66 | 40.0 | 4.63e-01 | 88.7% | 89.1% |
| 4945048 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 40.0 | 4.56e-01 | 88.7% | 87.3% |
| 4010472 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.66 | 39.0 | 4.50e-01 | 86.3% | 92.0% |
| 4966784 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 39.0 | 4.35e-01 | 76.2% | 78.3% |
| 4979948 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 40.0 | 4.59e-01 | 90.0% | 89.1% |
| 3946469 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.66 | 42.0 | 4.39e-01 | 82.5% | 70.7% |
| 5029044 | 101.1.2.650 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7343 | 0.65 | 39.0 | 3.63e-01 | 75.0% | 46.5% |
| 5030106 | 101.1.2.140 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type | 0.65 | 40.0 | 4.51e-01 | 87.5% | 87.3% |
| 1100748 | 101.1.2.36 ↗ | alpha arrays › HTH › HTH › winged helix domain › z-alpha | 0.65 | 40.0 | 4.38e-01 | 73.8% | 77.8% |
| 4944620 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 39.0 | 4.49e-01 | 87.5% | 87.3% |
| 3387962 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.65 | 42.0 | 4.88e-01 | 90.0% | 98.1% |
| 4277992 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.64 | 45.0 | 4.69e-01 | 73.8% | 89.3% |
| 4943214 | 896.1.1.0 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related | 0.64 | 37.0 | 3.98e-01 | 95.0% | 65.7% |
| 3587350 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.64 | 38.0 | 4.56e-01 | 77.5% | 94.0% |
| 5076741 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.63 | 39.0 | 4.47e-01 | 88.7% | 98.0% |
| 4962535 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 38.0 | 3.96e-01 | 88.7% | 64.0% |
| 3591633 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.62 | 43.0 | 3.90e-01 | 71.2% | 97.3% |
| 4978386 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.62 | 38.0 | 4.09e-01 | 90.0% | 72.1% |
| 5062184 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.62 | 38.0 | 4.20e-01 | 88.7% | 81.7% |
| 3864474 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.61 | 44.0 | 3.56e-01 | 77.5% | 64.2% |
| 4929137 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 49.0 | 4.70e-01 | 90.0% | 84.2% |
| 3707741 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 38.0 | 4.08e-01 | 90.0% | 78.5% |
| 5053252 | 101.1.2.304 ↗ | alpha arrays › HTH › HTH › winged helix domain › E3_UFM1_ligase | 0.60 | 46.0 | 4.19e-01 | 83.7% | 90.9% |
| 4141107 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.60 | 42.0 | 4.21e-01 | 77.5% | 72.5% |
| 5082754 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.60 | 37.0 | 4.10e-01 | 88.7% | 81.7% |
| 3609864 | 101.1.2.22 ↗ | alpha arrays › HTH › HTH › winged helix domain › PCI | 0.59 | 47.0 | 3.45e-01 | 86.3% | 68.2% |
| 3648115 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.59 | 43.0 | 3.63e-01 | 76.2% | 91.1% |
| 5079731 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 43.0 | 4.59e-01 | 77.5% | 92.9% |
| 3260369 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.59 | 32.0 | 4.03e-01 | 95.0% | 93.3% |
| 3970023 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 45.0 | 4.55e-01 | 82.5% | 85.0% |
| 4249934 | 2484.1.1.37 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase | 0.58 | 43.0 | 3.77e-01 | 100.0% | 52.5% |
| 3578543 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.58 | 41.0 | 4.49e-01 | 87.5% | 100.0% |
| 4224164 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.57 | 44.0 | 4.47e-01 | 83.7% | 90.0% |
| 4970984 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 45.0 | 4.46e-01 | 88.7% | 89.4% |
| 3941670 | 101.1.2.110 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_IclR | 0.56 | 42.0 | 4.31e-01 | 80.0% | 85.3% |
| 3590524 | 101.1.2.110 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_IclR | 0.56 | 41.0 | 4.25e-01 | 80.0% | 86.7% |
| 5000498 | 896.1.1.1 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Ribosomal_L38e | 0.55 | 33.0 | 3.67e-01 | 95.0% | 78.3% |
| 3174487 | 2498.5.1.0 ↗ | mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like | 0.55 | 43.0 | 2.93e-01 | 88.7% | 95.2% |
| 4971366 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 41.0 | 4.27e-01 | 92.5% | 86.7% |
| 3602631 | 101.1.2.150 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_45 | 0.55 | 41.0 | 4.19e-01 | 82.5% | 86.3% |
| 166543 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.53 | 40.0 | 3.30e-01 | 82.5% | 55.9% |
| 5039269 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.53 | 40.0 | 3.90e-01 | 81.2% | 76.7% |
| 5005819 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 35.0 | 3.50e-01 | 100.0% | 64.7% |
| 3177133 | 193.1.1.1 ↗ | alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › CH | 0.51 | 39.0 | 3.25e-01 | 85.0% | 86.5% |
| 4973486 | 101.1.2.63 ↗ | alpha arrays › HTH › HTH › winged helix domain › FaeA | 0.51 | 42.0 | 3.98e-01 | 93.8% | 85.0% |
| 5057633 | 3651.1.1.0 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain | 0.51 | 41.0 | 3.70e-01 | 91.3% | 99.1% |
| 4930868 | 2484.1.1.334 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF1786 | 0.51 | 43.0 | 2.92e-01 | 100.0% | 24.1% |
| 4927466 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.50 | 35.0 | 3.40e-01 | 92.5% | 64.4% |
| 4929178 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.50 | 39.0 | 2.99e-01 | 86.3% | 46.3% |
D3
medium
residues 431-441_759-886
Domain cluster:
rep: hypothetical_protein__YP_009337806__Shuangao_insect_virus_11__1923467__D743-868
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1b72A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.67 | 26.0 | 3.80e-01 | 84.9% | 76.5% |
| 2dn0A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.65 | 25.0 | 3.41e-01 | 84.9% | 65.8% |
| 2ys9A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.63 | 24.0 | 3.34e-01 | 85.6% | 68.6% |
| 1x2nA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.63 | 26.0 | 4.01e-01 | 84.9% | 91.7% |
| 1bw5A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.62 | 25.0 | 3.57e-01 | 86.3% | 78.8% |
| 3dteA02 | 1.10.10.1030 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › IrrE, HTH domain | 0.57 | 20.0 | 3.33e-01 | 82.7% | 100.0% |
| 2awiA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.55 | 25.0 | 3.50e-01 | 82.0% | 88.1% |
| 2da7A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.54 | 27.0 | 3.71e-01 | 94.2% | 94.4% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3781 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.68 | 53.0 | 4.75e-01 | 82.0% | 64.7% |
| 3949024 | 101.1.6.5 ↗ | alpha arrays › HTH › HTH › TrpR › HTH_18 | 0.54 | 21.0 | 3.45e-01 | 88.5% | 100.0% |
D4
medium
residues 446-474_522-556_648-663
Domain cluster:
representative
D5
medium
residues 585-602_700-757
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4oi3A00 | 3.30.70.3090 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ORF SCO4226, nickel-binding ferredoxin-like monomer | 0.57 | 41.0 | 4.01e-01 | 76.3% | 100.0% |
| 2uzgA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.51 | 39.0 | 3.68e-01 | 85.5% | 81.1% |