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RNA-dependent_RNA_polymerase

Euk-Vir

Bermuda_grass_latent_virus

RNA-dependent_RNA_polymerase__YP_009333133__Bermuda_grass_latent_virus__1930269

Identity

Accession:
YP_009333133 ↗
Protein ID:
RNA-dependent_RNA_polymerase
Kingdom:
euk

Quality

76.2 mean pLDDT

Cluster

View cluster (58 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 153-277
PDB
Domain cluster: rep: replicase__YP_009037607__Moroccan_pepper_virus__208086__D159-283
D2 high residues 726-861
PDB
Domain cluster: rep: P95_replicase__YP_009259667__Pelargonium_leaf_curl_virus__35280__D527-559_693-852
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00998.29 best RdRP_3 112.1 4.10e-32 87.5% 25.1%
D3 medium residues 332-333_335-405_474-516
PDB
Domain cluster: rep: hypothetical_protein_1__YP_009337417__Changjiang_tombus-like_virus_9__1922823__D348-350_352-432_502-513
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF00998.29 best RdRP_3 28.4 1.00e-06 46.6% 9.5%
PF00998.29 RdRP_3 52.8 4.00e-14 39.7% 8.8%
D4 medium residues 420-473_517-538
PDB
Domain cluster: rep: hypothetical_protein_2__YP_009337230__Changjiang_tombus-like_virus_4__1922818__D31-86_127-150
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00998.29 best RdRP_3 34.3 1.70e-08 73.7% 11.1%
D5 medium residues 539-578_641-725
PDB
Domain cluster: rep: hypothetical_protein_1__YP_009337274__Changjiang_tombus-like_virus_14__1922807__D158-196_253-344
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF00998.29 best RdRP_3 106.6 1.90e-30 68.0% 17.5%
PF00998.29 RdRP_3 47.0 2.40e-12 32.0% 8.0%
D6 medium residues 579-640
PDB
Domain cluster: rep: hypothetical_protein_2__YP_009337657__Changjiang_tombus-like_virus_11__1922804__D27-99
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00998.29 best RdRP_3 96.3 2.60e-27 100.0% 12.8%