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RNA-dependent_RNA_polymerase

Euk-Vir

Beihai_narna-like_virus_15

RNA-dependent_RNA_polymerase__YP_009333147__Beihai_narna-like_virus_15__1922442

Identity

Accession:
YP_009333147 ↗
Protein ID:
RNA-dependent_RNA_polymerase
Kingdom:
euk

Quality

73.7 mean pLDDT

Cluster

View cluster (11 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 100-256_281-334
PDB
Domain cluster: rep: replication_associated_protein__YP_009345107__Amphibola_crenata_associated_bacilladnavirus_1__1941435__D302-478
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00910.29 best RNA_helicase 95.1 4.90e-27 51.7% 99.1%
D2 medium residues 11-95_339-379_423-475
PDB
Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009333261__Beihai_narna-like_virus_23__1922451__D199-311_371-432
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5cqgA02 3.10.10.20 Alpha Beta › Roll › HIV Type 1 Reverse Transcriptase; Chain A, domain 1 › 0.63 27.0 4.07e-01 99.4% 97.2%
1yu9A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 27.0 2.80e-01 96.6% 47.9%
1d5cA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 26.0 2.74e-01 93.9% 48.1%
1z2aA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 25.0 2.66e-01 96.1% 48.2%
2xtmA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 28.0 2.69e-01 96.1% 43.0%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3615272 304.48.1.25 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RRM_4 0.65 54.0 4.15e-01 86.0% 59.2%
3792091 304.48.1.25 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RRM_4 0.65 52.0 4.19e-01 84.9% 58.8%
3589612 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.65 50.0 4.07e-01 80.4% 62.1%
4497954 304.48.1.73 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1, RVT_N 0.63 50.0 4.09e-01 81.0% 65.2%
3598902 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.63 52.0 4.01e-01 86.6% 59.5%
4004424 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.62 48.0 3.78e-01 80.4% 54.4%
4071235 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.62 48.0 3.48e-01 81.0% 39.0%
4516798 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.62 48.0 3.57e-01 81.0% 43.3%
3960648 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.58 44.0 3.63e-01 77.7% 64.9%
3910068 2004.1.1.19 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.55 29.0 2.91e-01 100.0% 47.2%
3270940 2004.1.1.19 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.54 28.0 2.78e-01 95.5% 44.9%
5052926 2004.1.1.19 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.52 27.0 2.71e-01 98.9% 44.2%
3920857 2004.1.1.118 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AIG1 0.51 29.0 2.96e-01 97.2% 53.7%
3884391 2004.1.1.19 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.51 28.0 3.09e-01 96.6% 62.8%
D3 medium residues 380-422_476-527
PDB
Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009337087__Hubei_narna-like_virus_4__1922958__D375-415_481-588
D4 medium residues 571-713
PDB