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RNA-dependent_RNA_polymerase

Euk-Vir

Beihai_narna-like_virus_8

RNA-dependent_RNA_polymerase__YP_009333267__Beihai_narna-like_virus_8__1922460

Identity

Accession:
YP_009333267 ↗
Protein ID:
RNA-dependent_RNA_polymerase
Kingdom:
euk

Quality

72.5 mean pLDDT

Cluster

View cluster (39 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-160
PDB
Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009333251__Beihai_narna-like_virus_6__1922458__D1-144
D2 medium residues 161-208_286-366_436-471
PDB
Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009337789__Hubei_mosquito_virus_3__1922927__D96-120_142-166_191-245_318-333
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2mq8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.52 22.0 2.66e-01 83.0% 54.5%
2r7rA05 1.10.357.80 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.52 46.0 4.59e-01 97.0% 96.0%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4804033 304.48.1.12 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Mononeg_RNA_pol 0.60 52.0 3.92e-01 93.3% 76.9%
3792091 304.48.1.25 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RRM_4 0.51 41.0 3.18e-01 83.0% 57.1%
4071235 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.51 38.0 2.66e-01 76.4% 38.6%
3929061 4955.1.1.0 ↗ a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.50 22.0 2.87e-01 96.4% 69.5%
D3 medium residues 209-285
PDB
D4 medium residues 367-435_472-566
PDB
Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009337087__Hubei_narna-like_virus_4__1922958__D375-415_481-588
D5 medium residues 603-673_771-794
PDB
Domain cluster: representative