RNA-dependent_RNA_polymerase

Euk-Vir

Hubei_narna-like_virus_2

RNA-dependent_RNA_polymerase__YP_009336796__Hubei_narna-like_virus_2__1922950

Identity

77.3 mean pLDDT

View cluster (39 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-170

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009333283__Beihai_narna-like_virus_1__1922436__D3-169

D2 medium residues 198-223_326-337_392-439

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009336520__Wenzhou_narna-like_virus_3__1923578__D341-360_401-449

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1vmgA00	1.10.287.1080	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like	0.68	31.0	3.17e-01	70.9%	43.9%
3egqA00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.60	34.0	2.71e-01	84.9%	29.3%
3pxpA01	1.10.260.40	Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains	0.55	37.0	3.66e-01	70.9%	64.5%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3903917	5058.1.1.17 ↗	alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › NRN1	0.52	30.0	3.02e-01	100.0%	52.9%
5051217	2006.1.1.18 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2	0.50	43.0	3.26e-01	97.7%	54.2%

D3 medium residues 224-259_281-325_338-351

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009336520__Wenzhou_narna-like_virus_3__1923578__D247-340

D4 medium residues 352-391_440-550

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009337087__Hubei_narna-like_virus_4__1922958__D375-415_481-588

D5 medium residues 551-618

PDB