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RNA-dependent_RNA_polymerase
Euk-VirHubei_narna-like_virus_9
RNA-dependent_RNA_polymerase__YP_009336802__Hubei_narna-like_virus_9__1922962
Identity
- Accession:
- YP_009336802 ↗
- Protein ID:
- RNA-dependent_RNA_polymerase
- Kingdom:
- euk
Quality
62.9
mean pLDDT
Cluster
View cluster (39 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-58
D2
medium
residues 327-466
D3
medium
residues 467-539_621-730
D4
medium
residues 731-836
Domain cluster:
rep: RNA-dependent_RNA_polymerase__YP_009337159__Wenling_narna-like_virus_3__1923503__D602-722
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7ep1B01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.56 | 49.0 | 3.84e-01 | 100.0% | 78.9% |
| 3nqpA00 | 1.25.40.390 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.51 | 43.0 | 2.85e-01 | 96.2% | 54.1% |
| 4o92A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.51 | 37.0 | 3.71e-01 | 76.4% | 84.8% |
| 4hehA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.51 | 35.0 | 3.91e-01 | 72.6% | 96.4% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3688507 | 109.2.1.37 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Bac_rhamnosid6H | 0.56 | 49.0 | 3.38e-01 | 100.0% | 48.5% |
| 5019495 | 5063.1.1.23 ↗ | alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › CbiQ | 0.50 | 40.0 | 2.98e-01 | 84.9% | 100.0% |
| 3736892 | 109.54.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › Utp12 | 0.50 | 39.0 | 3.48e-01 | 85.8% | 56.2% |
D5
medium
residues 837-902