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RNA-dependent_RNA_polymerase

Euk-Vir

Beihai_weivirus-like_virus_8

RNA-dependent_RNA_polymerase__YP_009336935__Beihai_weivirus-like_virus_8__1922755

Identity

Accession:
YP_009336935 ↗
Protein ID:
RNA-dependent_RNA_polymerase
Kingdom:
euk

Quality

78.1 mean pLDDT

Cluster

View cluster (18 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-42_100-204
PDB
D2 medium residues 485-769
PDB
Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009333318__Wenzhou_narna-like_virus_4__1923579__D255-280_441-636
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1s7hA01 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.70 22.0 4.27e-01 71.9% 100.0%
2nyiA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.68 23.0 4.29e-01 70.9% 100.0%
3p96A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.67 22.0 4.06e-01 73.3% 97.6%
3nwgA02 3.30.70.1710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain 0.64 25.0 4.08e-01 84.6% 98.0%
1mwqA00 3.30.70.1060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel 0.61 24.0 3.97e-01 73.0% 100.0%
5uejA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 26.0 4.08e-01 71.9% 100.0%
3io1A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 25.0 3.95e-01 71.6% 97.4%
5k8mA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 28.0 4.09e-01 71.9% 99.2%
3qpiA00 3.30.70.3420 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 27.0 3.44e-01 81.1% 80.3%
2i6hA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 16.0 2.68e-01 82.8% 77.1%
1yhqH00 3.90.1170.10 Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Ribosomal protein L16/L10 0.51 28.0 3.68e-01 90.9% 95.0%
3uxfA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 18.0 2.57e-01 84.6% 63.6%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4875416 304.48.1.13 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Flavi_NS5 0.77 68.0 5.95e-01 100.0% 65.3%
4218573 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.75 62.0 5.72e-01 100.0% 69.1%
4152428 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.75 61.0 5.62e-01 100.0% 67.0%
1697857 304.48.1.30 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › CPV_RdRP_pol_dom 0.73 62.0 5.77e-01 93.0% 72.2%
3926438 304.48.1.37 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_2 0.72 52.0 5.52e-01 100.0% 83.2%
4509594 304.28.1.2 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Sec_GG 0.72 24.0 4.43e-01 75.1% 100.0%
5048300 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.71 23.0 3.92e-01 73.3% 81.0%
4988375 304.8.1.96 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF26798 0.69 23.0 4.32e-01 71.9% 100.0%
4361688 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.68 61.0 5.54e-01 100.0% 71.2%
None — 0.68 62.0 5.70e-01 99.3% 76.6%
3615476 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.67 60.0 5.76e-01 94.4% 87.4%
4188583 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.66 60.0 5.19e-01 96.5% 65.1%
3173834 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.65 59.0 5.18e-01 96.1% 65.9%
4461237 4967.1.1.0 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.65 62.0 4.99e-01 100.0% 72.2%
3645796 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.64 51.0 5.08e-01 96.8% 78.7%
4989167 304.134.1.0 ↗ a+b two layers › Alpha-beta plaits › MJ1480-like › MJ1480-like 0.62 22.0 3.93e-01 72.6% 97.9%
5079685 5104.1.1.0 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.61 21.0 3.15e-01 85.3% 68.0%
3970196 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.61 23.0 3.90e-01 71.9% 97.0%
4165624 304.162.1.0 ↗ a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain 0.61 21.0 3.72e-01 70.2% 98.8%
4645327 325.1.5.1 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal protein L10e › Ribosomal_L16 0.55 26.0 3.77e-01 86.3% 96.2%
3334380 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.55 50.0 4.53e-01 94.4% 75.4%
4946510 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.53 22.0 3.46e-01 83.5% 100.0%
4062740 304.1.1.1 ↗ a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C 0.53 24.0 3.24e-01 84.2% 80.0%
5000844 325.1.5.1 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal protein L10e › Ribosomal_L16 0.51 27.0 3.71e-01 86.0% 100.0%
4116457 304.1.1.1 ↗ a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C 0.51 23.0 3.24e-01 87.0% 85.5%
4989946 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.51 21.0 3.28e-01 70.2% 96.4%