←Back to structures

RNA-dependent_RNA_polymerase

Euk-Vir

Beihai_weivirus-like_virus_13

RNA-dependent_RNA_polymerase__YP_009337101__Beihai_weivirus-like_virus_13__1922742

Identity

Accession:: YP_009337101 ↗
Protein ID:: RNA-dependent_RNA_polymerase
Kingdom:: euk

Quality

77.0 mean pLDDT

Cluster

View cluster (18 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 20-65_78-178

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009337047__Beihai_weivirus-like_virus_7__1922754__D6-140

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2khmA01	1.10.10.1350	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain	0.62	38.0	4.35e-01	87.8%	82.4%
2yqzA02	1.10.8.900	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.62	24.0	3.44e-01	78.9%	75.0%
2qsbA00	1.20.1440.50	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like	0.58	29.0	3.61e-01	70.1%	77.6%
3s63A00	1.10.225.10	Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like	0.57	33.0	4.15e-01	89.8%	95.5%
3eslA01	1.20.58.2070	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.57	27.0	3.55e-01	74.1%	84.0%
3qnmA02	1.10.150.240	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2	0.56	32.0	3.82e-01	94.6%	87.8%
1grlB01	1.10.560.10	Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain	0.54	40.0	3.36e-01	76.2%	89.3%
5fb0A02	1.20.920.10	Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like	0.53	31.0	3.51e-01	72.1%	75.0%

ECOD (17)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4026195	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.62	29.0	3.79e-01	78.2%	81.3%
3605793	604.9.1.0 ↗	alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20	0.61	32.0	4.14e-01	78.9%	94.7%
5001060	1134.1.1.0 ↗	alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain	0.61	29.0	3.73e-01	75.5%	80.8%
3700116	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.60	39.0	4.41e-01	92.5%	86.4%
3171699	101.1.1.133 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Vhr1	0.60	34.0	4.02e-01	83.7%	81.0%
3948771	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.58	28.0	3.64e-01	86.4%	84.0%
4002034	633.1.1.1 ↗	alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain	0.58	30.0	3.59e-01	70.7%	74.7%
4014527	532.2.1.0 ↗	alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains	0.56	33.0	3.94e-01	73.5%	88.4%
3936678	164.1.1.0 ↗	alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II	0.55	30.0	3.80e-01	74.8%	95.0%
3926402	639.2.1.0 ↗	alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR)	0.54	30.0	3.79e-01	85.7%	95.0%
3461259	304.8.1.0 ↗	a+b two layers › Alpha-beta plaits › ACT-like › ACT-like	0.54	24.0	3.63e-01	86.4%	96.9%
4994339	601.5.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › Colicin D immunity protein › Colicin D immunity protein	0.54	27.0	3.65e-01	87.8%	98.6%
4987757	5054.1.1.6 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH	0.53	26.0	3.00e-01	89.1%	60.6%
3901917	1134.1.1.7 ↗	alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain › ALA1	0.52	25.0	3.40e-01	75.5%	91.4%
4159522	3724.1.1.0 ↗	alpha arrays › Phosphoinositide phosphatase C-terminal helical domain › Phosphoinositide phosphatase C-terminal helical domain › Phosphoinositide phosphatase C-terminal helical domain	0.52	32.0	3.73e-01	76.9%	85.7%
4982222	604.12.1.0 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain	0.52	27.0	3.39e-01	73.5%	83.5%
4958049	4204.1.1.5 ↗	alpha bundles › AF0941-like › AF0941-like › AF0941-like › DUF2150	0.50	31.0	3.48e-01	79.6%	80.0%

D2 medium residues 291-349_369-406_435-533

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009337141__Beihai_weivirus-like_virus_15__1922743__D392-442_461-485_531-592

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3sqiA01	1.10.150.540	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 ›	0.53	24.0	3.35e-01	71.4%	83.8%
3fp3A01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.52	21.0	2.52e-01	88.3%	50.4%

D3 medium residues 663-812

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2j9wB00	1.20.120.1130	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vps28 C-terminal domain	0.60	32.0	3.81e-01	70.0%	74.7%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3222420	109.3.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat	0.50	37.0	3.67e-01	99.3%	73.5%