←Back to structures

RNA-dependent_RNA_polymerase

Euk-Vir

Beihai_weivirus-like_virus_1

RNA-dependent_RNA_polymerase__YP_009337128__Beihai_weivirus-like_virus_1__1922738

Identity

Accession:: YP_009337128 ↗
Protein ID:: RNA-dependent_RNA_polymerase
Kingdom:: euk

Quality

77.1 mean pLDDT

Cluster

View cluster (18 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-129_216-239

PDB

D2 medium residues 338-410_787-806

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3mlqH00	2.40.10.170	Mainly Beta › Beta Barrel › Thrombin, subunit H ›	0.54	24.0	3.32e-01	81.7%	88.1%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4883516	2.11.1.1 ↗	beta barrels › OB-fold › Antifungal protein (AGAFP) › Antifungal protein (AGAFP) › Antifungal_prot	0.51	27.0	3.23e-01	91.4%	79.3%

D3 medium residues 442-482_508-531_576-614

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009337141__Beihai_weivirus-like_virus_15__1922743__D392-442_461-485_531-592

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2odmA00	1.10.287.750	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like	0.58	38.0	4.29e-01	89.4%	87.3%
6ks6G01	1.10.560.10	Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain	0.58	46.0	3.51e-01	87.5%	81.2%
5aioA01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.57	31.0	2.75e-01	100.0%	34.8%
3jsbA01	1.20.1440.300	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › RNA-directed RNA polymerase L, helical domain	0.56	35.0	3.87e-01	91.3%	77.8%
3gyuA00	1.10.565.10	Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor	0.55	49.0	3.77e-01	99.0%	94.6%
4g1tA02	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.54	29.0	3.63e-01	95.2%	86.9%
1s1fA00	1.10.630.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450	0.52	45.0	3.09e-01	96.2%	85.4%
4dnjA00	1.10.630.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450	0.52	43.0	2.96e-01	93.3%	84.2%
4eqqA02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.51	24.0	3.13e-01	70.2%	85.4%
2v0xA01	1.10.287.3160	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.51	35.0	3.01e-01	71.2%	86.3%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3718013	621.1.1.7 ↗	alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › EMC6	0.55	40.0	4.19e-01	88.5%	83.2%
3505626	186.2.1.1 ↗	alpha arrays › lambda integrase-N-like › VEFS domain › VEFS domain › VEFS-Box	0.54	40.0	4.15e-01	85.6%	86.3%
5055263	604.39.1.3 ↗	alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › ECF-ribofla_trS	0.50	41.0	3.48e-01	90.4%	78.3%

D4 medium residues 483-507_532-575_615-786

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009337040__Changjiang_tombus-like_virus_21__1922815__D1-47_99-181

D5 medium residues 807-930

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009337047__Beihai_weivirus-like_virus_7__1922754__D604-746