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RNA-dependent_RNA_polymerase

Euk-Vir

Beihai_weivirus-like_virus_20

RNA-dependent_RNA_polymerase__YP_009337226__Beihai_weivirus-like_virus_20__1922749

Identity

Accession:
YP_009337226 ↗
Protein ID:
RNA-dependent_RNA_polymerase
Kingdom:
euk

Quality

68.2 mean pLDDT

Cluster

View cluster (18 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 449-582
PDB
D2 medium residues 90-126_181-206
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2g5gX02 1.10.8.760 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Haem-binding uptake, Tiki superfamily, ChaN, domain 2 0.63 45.0 4.60e-01 77.8% 81.4%
3o60A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.63 46.0 3.33e-01 79.4% 36.3%
2i10B02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.60 48.0 3.86e-01 88.9% 62.4%
3d2fA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.60 43.0 4.00e-01 79.4% 65.5%
4q5eA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.58 38.0 3.45e-01 79.4% 46.2%
4m70B00 1.10.246.200 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain 0.57 45.0 3.99e-01 85.7% 70.3%
3l1nA02 1.20.1280.140 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.55 38.0 3.49e-01 73.0% 64.4%
3keyA01 1.10.10.1080 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain 0.55 44.0 4.01e-01 92.1% 66.7%
4dokA01 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.53 38.0 2.95e-01 77.8% 97.4%
2l5qA02 1.10.10.1650 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.52 36.0 3.29e-01 74.6% 53.3%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1868087 622.1.1.2 ↗ alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HsbA 0.56 39.0 3.54e-01 73.0% 68.6%
D3 medium residues 156-180_245-309
PDB
D4 medium residues 207-244_310-448
PDB
Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009336943__Beihai_weivirus-like_virus_17__1922745__D452-486_550-696