RNA-dependent_RNA_polymerase

Euk-Vir

Wenzhou_narna-like_virus_7

RNA-dependent_RNA_polymerase__YP_009337386__Wenzhou_narna-like_virus_7__1923582

Identity

53.5 mean pLDDT

Singleton — not in a non-trivial cluster

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-61

PDB

D2 high residues 572-658

PDB

D3 medium residues 75-109_137-152

PDB

D4 medium residues 167-191_265-297

PDB

Domain cluster: representative

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4g6tB00	6.10.20.120	Special › Helix non-globular › Arc Repressor Mutant, subunit A ›	0.62	31.0	2.87e-01	91.4%	36.6%
4j80A02	2.60.260.20	Mainly Beta › Sandwich › HSP40/DNAj peptide-binding domain › Urease metallochaperone UreE, N-terminal domain	0.58	32.0	3.16e-01	72.4%	45.5%
2z0xA00	3.90.960.10	Alpha Beta › Alpha-Beta Complex › YbaK protein › YbaK/aminoacyl-tRNA synthetase-associated domain	0.55	47.0	3.51e-01	100.0%	62.4%
3cnwA00	3.30.530.20	Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain	0.54	37.0	2.88e-01	74.1%	31.2%
1t6aA02	3.30.310.120	Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein	0.53	36.0	3.29e-01	100.0%	52.6%
2sliA03	2.40.220.10	Mainly Beta › Beta Barrel › Intramolecular trans-sialidase; domain 3 › Intramolecular Trans-sialidase; Domain 3	0.52	32.0	2.75e-01	98.3%	36.0%
1cjcA02	3.50.50.60	Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain	0.51	34.0	2.35e-01	70.7%	42.7%
2jugA01	1.10.10.1830	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Non-ribosomal peptide synthase, adenylation domain	0.50	29.0	2.98e-01	81.0%	58.2%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3980839	2008.1.1.77 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NOV_C	0.59	51.0	3.83e-01	100.0%	51.0%
5026346	1075.1.1.3 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_2	0.57	48.0	3.20e-01	100.0%	68.8%
3465998	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.57	47.0	3.10e-01	100.0%	50.3%
3402884	304.103.1.3 ↗	a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › MMADHC	0.51	40.0	3.12e-01	93.1%	93.3%
4961550	3156.1.1.8 ↗	beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cu-oxidase_2	0.50	42.0	3.04e-01	100.0%	53.0%
None	—		0.50	37.0	2.43e-01	82.8%	48.1%

D5 medium residues 192-264_298-335_348-431

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009337087__Hubei_narna-like_virus_4__1922958__D375-415_481-588