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RNA-dependent_RNA_polymerase

Euk-Vir

Botryosphaeria_dothidea_virus_1

RNA-dependent_RNA_polymerase__YP_009342446__Botryosphaeria_dothidea_virus_1__1516075

Identity

Accession:
YP_009342446 ↗
Protein ID:
RNA-dependent_RNA_polymerase
Kingdom:
euk

Quality

85.9 mean pLDDT

Cluster

View cluster (51 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-63
PDB
D2 high residues 576-748
PDB
Domain cluster: rep: RNA_dependent_RNA_polymerase__YP_009352879__Beauveria_bassiana_polymycovirus_1__1740646__D597-774
D3 medium residues 74-156_195-220_326-327_329-344_453-481
PDB
Domain cluster: rep: NIb__YP_006908987__Rose_yellow_mosaic_virus__1048434__D1-17_73-106_202-219_246-320
D4 medium residues 221-244_345-376_401-452_482-566
PDB
Domain cluster: rep: NIb__YP_006908987__Rose_yellow_mosaic_virus__1048434__D1-17_73-106_202-219_246-320
D5 medium residues 245-325
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kp7A01 1.10.150.110 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like 0.60 30.0 3.18e-01 76.5% 48.6%
1oo0A00 3.30.1560.10 Alpha Beta › 2-Layer Sandwich › Mago nashi protein › Mago nashi 0.59 43.0 3.52e-01 76.5% 61.8%
3moiA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 41.0 3.14e-01 74.1% 46.9%
6zbsA02 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.57 45.0 3.41e-01 87.7% 85.2%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3962159 1075.5.1.2 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MurJ 0.60 45.0 3.56e-01 79.0% 60.0%
3700143 2484.1.1.48 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II 0.53 37.0 2.96e-01 85.2% 34.7%
4445945 7522.1.1.2 ↗ a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › XFP_C 0.52 41.0 3.18e-01 88.9% 44.9%
3734088 2487.1.1.8 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › RraA-like 0.52 36.0 2.73e-01 74.1% 98.6%