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RNA-dependent_RNA_polymerase

Euk-Vir

Ixeridium_yellow_mottle_virus_2

RNA-dependent_RNA_polymerase__YP_009352229__Ixeridium_yellow_mottle_virus_2__1817526

Identity

Accession:
YP_009352229 ↗
Protein ID:
RNA-dependent_RNA_polymerase
Kingdom:
euk

Quality

71.2 mean pLDDT

Cluster

View cluster (58 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 682-834
PDB
Domain cluster: rep: P95_replicase__YP_009259667__Pelargonium_leaf_curl_virus__35280__D527-559_693-852
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00998.29 best RdRP_3 103.2 2.10e-29 84.3% 27.8%
D2 medium residues 247-319
PDB
Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_002302259__Carrot_mottle_virus__68033__D254-317
D3 medium residues 320-410_461-481
PDB
Domain cluster: rep: replicase__NP_620846__Pea_enation_mosaic_virus_2__193120__D300-380
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00998.29 best RdRP_3 34.8 1.10e-08 61.6% 14.0%
D4 medium residues 411-460_482-520
PDB
Domain cluster: rep: P95_replicase__YP_009259667__Pelargonium_leaf_curl_virus__35280__D425-467_490-526
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF00998.29 best RdRP_3 27.5 2.00e-06 55.1% 8.8%
PF00998.29 RdRP_3 35.1 9.30e-09 50.6% 9.0%
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1e91A00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.54 32.0 3.27e-01 74.2% 58.8%
4qbuA02 3.40.366.10 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › Malonyl-Coenzyme A Acyl Carrier Protein, domain 2 0.54 44.0 3.32e-01 93.3% 73.9%
6xasW01 3.90.940.10 Alpha Beta › Alpha-Beta Complex › Eukaryotic RPB6 RNA polymerase subunit › RNA polymerase subunit, RPB6/omega 0.52 26.0 3.12e-01 77.5% 75.5%
1st6A03 1.20.120.810 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vinculin, Vh2 four-helix bundle 0.52 41.0 3.07e-01 86.5% 97.8%
5g5gA02 1.10.150.120 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain 0.51 34.0 3.45e-01 86.5% 68.9%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3193711 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 39.0 3.01e-01 82.0% 49.4%
3701315 5076.1.1.1 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.50 43.0 2.99e-01 96.6% 52.6%
D5 medium residues 537-547_612-676
PDB
Domain cluster: rep: IMGVR_UViG_3300016457_001358-3300016457-Ga0186713_11630063__D4-82
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00998.29 best RdRP_3 77.2 1.70e-21 93.4% 14.0%
CATH (99)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2re1A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.83 75.0 7.62e-01 98.7% 100.0%
1zvpD00 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.81 64.0 5.21e-01 85.5% 48.1%
1in0A01 3.30.70.860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.81 68.0 7.08e-01 96.1% 100.0%
3aawA02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.79 64.0 4.91e-01 89.5% 40.0%
4pwuC00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.78 72.0 7.15e-01 100.0% 98.7%
2diuA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.77 68.0 6.92e-01 96.1% 100.0%
5wm1A02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.77 70.0 6.18e-01 100.0% 79.8%
1ybtB00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.77 70.0 5.28e-01 100.0% 51.7%
4dezA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.77 70.0 6.40e-01 100.0% 79.8%
1vbkA01 3.30.70.1510 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › THUMP domain-like 0.76 68.0 6.66e-01 98.7% 96.4%
3mahA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.76 63.0 6.56e-01 97.4% 100.0%
3im9A02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.76 64.0 6.48e-01 100.0% 94.6%
1u8sA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.75 69.0 6.60e-01 100.0% 95.3%
4qbuA03 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.75 60.0 6.35e-01 98.7% 100.0%
3tqeA02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.75 63.0 6.40e-01 100.0% 94.5%
2cpdA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.75 67.0 6.78e-01 98.7% 100.0%
2cpjA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.75 67.0 6.16e-01 98.7% 77.8%
3im8A02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.75 62.0 6.38e-01 100.0% 94.5%
5gt8D02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.74 49.0 4.18e-01 72.4% 42.6%
4aukA01 3.30.70.2810 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.74 66.0 6.53e-01 98.7% 96.2%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.74 66.0 5.09e-01 100.0% 48.5%
2f1fA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.74 67.0 6.68e-01 100.0% 100.0%
4rl1A02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.73 62.0 6.38e-01 100.0% 97.2%
2cqhA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.73 64.0 6.01e-01 97.4% 80.6%
1mw7A03 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.73 63.0 6.35e-01 100.0% 94.7%
2mzjA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.73 66.0 6.43e-01 100.0% 98.8%
1kviA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.73 63.0 6.29e-01 97.4% 96.2%
1jwwA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.73 64.0 6.38e-01 100.0% 100.0%
2kjwA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.73 64.0 5.96e-01 100.0% 87.5%
1lxnA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.72 64.0 5.95e-01 100.0% 80.6%
1lxjA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.72 65.0 5.87e-01 100.0% 74.8%
6lpnA03 3.30.70.2190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.72 64.0 5.64e-01 100.0% 86.8%
5i2cB01 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.72 59.0 4.73e-01 97.4% 45.9%
3onqA02 3.30.70.2730 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.72 64.0 6.28e-01 98.7% 97.5%
3ibwA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.72 65.0 6.48e-01 100.0% 97.5%
1rkiA01 3.30.70.1650 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › PDO, CxxC motif 0.72 61.0 5.64e-01 100.0% 74.2%
4erdA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.72 64.0 5.67e-01 98.7% 77.8%
2cveA02 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.72 58.0 6.16e-01 93.4% 100.0%
1t94B02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.72 64.0 5.46e-01 97.4% 84.0%
1bgxT05 3.30.70.370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.72 64.0 5.49e-01 100.0% 62.3%
1darA05 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.72 61.0 5.84e-01 100.0% 81.6%
1zhvA00 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.71 61.0 5.04e-01 98.7% 53.0%
2b4vA03 3.30.70.1970 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.71 63.0 5.81e-01 100.0% 88.9%
1sc6A03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.71 61.0 6.02e-01 96.1% 90.2%
2pgcC01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.71 62.0 5.80e-01 100.0% 100.0%
1usmA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.71 56.0 5.64e-01 86.8% 92.2%
1vk8A00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.71 62.0 5.87e-01 100.0% 81.7%
7ykvB02 3.10.310.30 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.71 56.0 5.09e-01 85.5% 64.4%
2kkhA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.71 59.0 6.01e-01 94.7% 96.0%
3vtiA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.71 62.0 5.77e-01 100.0% 80.2%
6u9hF02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.70 57.0 5.74e-01 100.0% 87.0%
1yqhA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.70 62.0 5.65e-01 100.0% 74.0%
3jcmH04 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.70 62.0 6.22e-01 100.0% 100.0%
2lqjA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.70 60.0 5.71e-01 100.0% 94.7%
5kfnA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.70 62.0 4.76e-01 100.0% 77.4%
2djwA01 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.70 61.0 6.19e-01 100.0% 98.6%
3dfeA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.70 62.0 6.07e-01 100.0% 93.9%
2ebbA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.70 56.0 5.20e-01 88.2% 76.0%
1z1dB00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.70 61.0 5.12e-01 98.7% 56.5%
2j0wA04 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.70 59.0 5.93e-01 93.4% 100.0%
6lpnA04 3.30.70.2740 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.70 58.0 5.48e-01 94.7% 89.5%
1jqgA01 3.30.70.340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Metallocarboxypeptidase-like 0.70 59.0 5.57e-01 100.0% 78.0%
2kl8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.69 61.0 5.96e-01 100.0% 92.9%
1qm9A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.69 60.0 5.61e-01 100.0% 83.7%
2lxfA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.69 61.0 5.24e-01 100.0% 62.8%
1e6vC00 3.90.320.20 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › Methyl-coenzyme M reductase, gamma subunit 0.69 60.0 4.17e-01 97.4% 44.8%
3m05B01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.69 60.0 5.72e-01 100.0% 100.0%
2zbcA01 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.68 59.0 6.03e-01 100.0% 100.0%
4pcqA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.68 61.0 5.89e-01 100.0% 89.3%
2mzwA01 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.68 58.0 5.84e-01 93.4% 93.4%
2ia0B02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.68 60.0 5.54e-01 100.0% 80.8%
2iboA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 59.0 5.69e-01 100.0% 95.5%
2cg4A02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.68 60.0 5.82e-01 100.0% 89.3%
7uvpA02 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.68 56.0 5.79e-01 90.8% 100.0%
2qz8A02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.68 58.0 5.70e-01 100.0% 88.9%
1s7hA01 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 58.0 5.79e-01 100.0% 97.5%
4f67A01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 56.0 5.07e-01 100.0% 68.9%
1dcoA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.66 52.0 4.82e-01 88.2% 74.7%
1afiA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 55.0 5.62e-01 94.7% 100.0%
4lowA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.65 52.0 5.11e-01 89.5% 83.3%
4hl9A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 56.0 5.29e-01 100.0% 96.8%
2p5vA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.65 57.0 5.58e-01 100.0% 89.3%
3ezjA02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.65 49.0 5.11e-01 88.2% 92.6%
2bj3D02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.65 56.0 5.55e-01 98.7% 93.8%
1lfwA03 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 52.0 5.00e-01 89.5% 81.8%
2kviA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.65 56.0 5.62e-01 100.0% 97.4%
1yrxC01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 57.0 5.17e-01 100.0% 78.8%
3tj8A02 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.64 47.0 4.82e-01 100.0% 82.4%
1b24A01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.64 47.0 4.37e-01 77.6% 65.3%
2l48A00 3.30.70.2030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 53.0 5.16e-01 96.1% 100.0%
3znuA00 3.30.70.1060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel 0.62 55.0 5.18e-01 100.0% 89.4%
3oq2A00 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 53.0 4.96e-01 100.0% 76.8%
5xyiU00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.61 52.0 4.88e-01 97.4% 100.0%
2lu2A00 3.30.70.2380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 52.0 5.15e-01 100.0% 98.8%
3d7aA01 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.59 49.0 4.20e-01 98.7% 84.6%
3c9gA01 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.58 51.0 4.34e-01 100.0% 84.9%
3c0wA02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.58 48.0 4.35e-01 97.4% 68.0%
1x60A01 3.30.70.1070 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat 0.57 47.0 4.80e-01 100.0% 100.0%
5koxA02 3.30.70.2450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 46.0 4.50e-01 100.0% 97.7%
ECOD (100)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4940257 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.83 72.0 7.49e-01 97.4% 100.0%
5035783 304.120.1.6 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer 0.83 76.0 7.50e-01 98.7% 100.0%
3971738 304.8.1.102 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_3, ACT_7 0.82 66.0 5.45e-01 85.5% 51.6%
4934080 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.82 67.0 5.24e-01 86.8% 46.0%
3936671 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.82 74.0 6.87e-01 98.7% 89.5%
4965406 304.8.1.21 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 0.82 73.0 7.25e-01 98.7% 96.2%
5076264 304.120.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.81 65.0 6.99e-01 96.1% 100.0%
4953322 304.8.1.10 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.81 71.0 7.04e-01 96.1% 92.5%
3698115 304.8.1.10 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.80 65.0 4.95e-01 94.7% 38.8%
4962984 304.8.1.10 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.80 65.0 6.39e-01 92.1% 81.2%
4017316 304.8.1.10 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.79 65.0 4.89e-01 96.1% 38.3%
5056043 304.120.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.79 63.0 6.74e-01 96.1% 100.0%
3932926 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.79 71.0 6.86e-01 98.7% 97.6%
5066741 304.8.1.21 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 0.79 71.0 6.83e-01 100.0% 91.8%
3784937 304.8.1.10 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.78 64.0 5.02e-01 93.4% 44.0%
5017421 304.120.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.78 62.0 6.63e-01 93.4% 100.0%
4101334 304.28.1.3 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › SecD-TM1 0.78 71.0 6.73e-01 100.0% 87.8%
3900717 304.8.1.10 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.76 61.0 6.09e-01 85.5% 83.5%
3507110 304.3.1.1 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA 0.76 68.0 6.72e-01 100.0% 95.0%
3709243 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.76 68.0 6.13e-01 100.0% 73.3%
5055913 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.76 68.0 5.99e-01 100.0% 83.6%
3606054 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.75 67.0 6.51e-01 100.0% 90.6%
3504994 304.163.1.1 ↗ a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › R1_ABCA1 0.75 67.0 6.13e-01 100.0% 77.8%
4227861 304.11.1.0 ↗ a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.75 65.0 6.55e-01 100.0% 94.7%
5044181 304.117.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC 0.75 65.0 6.59e-01 96.1% 100.0%
4960048 304.8.1.10 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.75 62.0 6.45e-01 96.1% 97.1%
5037293 304.126.1.0 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.75 62.0 6.51e-01 100.0% 97.1%
3742418 304.11.1.0 ↗ a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.74 66.0 6.42e-01 100.0% 89.4%
5072282 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.74 65.0 6.17e-01 98.7% 85.6%
3200754 304.3.1.1 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA 0.74 66.0 6.50e-01 100.0% 95.0%
3203942 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.74 65.0 6.22e-01 100.0% 88.9%
4093790 304.28.1.2 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Sec_GG 0.74 65.0 6.29e-01 98.7% 92.9%
5055915 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.74 64.0 6.10e-01 98.7% 87.8%
3594175 304.3.1.1 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA 0.73 64.0 6.46e-01 98.7% 100.0%
5043746 304.5.1.0 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.73 65.0 6.54e-01 97.4% 100.0%
4980947 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.73 64.0 6.13e-01 100.0% 93.3%
4118694 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.73 62.0 6.26e-01 100.0% 96.0%
3558890 304.3.1.1 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA 0.73 64.0 6.22e-01 100.0% 89.4%
5040129 304.26.1.1 ↗ a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP 0.73 64.0 5.98e-01 100.0% 78.9%
4779977 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.73 63.0 6.13e-01 98.7% 97.6%
3710853 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.73 64.0 6.36e-01 98.7% 93.8%
4118693 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.73 63.0 6.34e-01 100.0% 97.3%
4098712 304.14.1.0 ↗ a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) 0.73 62.0 6.25e-01 100.0% 96.0%
3732820 304.3.1.1 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA 0.72 64.0 6.36e-01 100.0% 96.2%
3816888 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.72 59.0 6.15e-01 100.0% 98.6%
3711456 304.3.1.1 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA 0.72 62.0 6.20e-01 98.7% 93.8%
3998323 304.9.1.58 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Nup35_RRM_2 0.72 64.0 5.66e-01 98.7% 70.9%
4329039 304.11.1.0 ↗ a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.72 61.0 6.29e-01 98.7% 100.0%
3174921 304.3.1.1 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA 0.72 63.0 6.28e-01 100.0% 95.0%
3800971 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.72 65.0 5.71e-01 100.0% 70.9%
5035588 304.4.1.1 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg 0.72 62.0 6.28e-01 100.0% 97.3%
4033172 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.71 60.0 5.96e-01 96.1% 88.7%
3891992 304.3.1.1 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA 0.71 62.0 6.16e-01 100.0% 96.2%
3838420 304.110.1.0 ↗ a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like 0.71 62.0 5.95e-01 100.0% 87.8%
3207480 304.3.1.1 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA 0.71 62.0 6.16e-01 100.0% 96.2%
3664175 304.3.1.1 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA 0.71 62.0 6.03e-01 100.0% 91.8%
5015637 304.5.1.0 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.71 63.0 6.19e-01 100.0% 92.5%
3685073 304.3.1.1 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA 0.71 62.0 6.02e-01 100.0% 89.4%
4663291 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.71 62.0 6.11e-01 98.7% 92.5%
3609452 304.24.1.3 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III 0.71 63.0 6.24e-01 100.0% 95.0%
3596989 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.71 63.0 6.22e-01 100.0% 96.2%
2879783 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.71 62.0 6.27e-01 100.0% 98.7%
5314 304.26.1.1 ↗ a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP 0.71 62.0 5.87e-01 100.0% 81.7%
4012107 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.71 62.0 6.10e-01 100.0% 95.0%
5315 304.26.1.1 ↗ a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP 0.70 62.0 5.71e-01 100.0% 76.2%
4939299 304.24.1.3 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III 0.70 61.0 5.86e-01 100.0% 84.4%
4012110 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.70 61.0 6.14e-01 98.7% 100.0%
1877679 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.69 61.0 5.60e-01 100.0% 77.0%
4889884 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.69 61.0 4.74e-01 100.0% 60.2%
3683611 304.24.1.3 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III 0.69 61.0 5.94e-01 100.0% 91.8%
3291108 304.154.1.1 ↗ a+b two layers › Alpha-beta plaits › Regulator of polyketide synthase expression N-terminal domain › Regulator of polyketide synthase expression N-terminal domain › GGDEF_2 0.69 61.0 4.93e-01 100.0% 57.3%
4011415 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.69 61.0 5.91e-01 100.0% 90.6%
5062185 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.69 61.0 5.79e-01 100.0% 92.2%
4130677 304.162.1.1 ↗ a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.69 57.0 5.85e-01 94.7% 100.0%
4030665 304.24.1.3 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III 0.69 60.0 5.77e-01 100.0% 86.7%
135996 304.3.1.1 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA 0.69 58.0 5.91e-01 98.7% 100.0%
4676848 304.24.1.3 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III 0.69 60.0 6.04e-01 97.4% 98.7%
3611003 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.69 60.0 5.98e-01 100.0% 97.5%
4984065 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.69 61.0 5.40e-01 100.0% 70.0%
2776431 304.24.1.3 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III 0.68 60.0 5.92e-01 100.0% 95.1%
3997731 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.68 59.0 5.85e-01 100.0% 97.5%
4056781 304.24.1.4 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › RF3_C 0.67 60.0 4.92e-01 100.0% 82.1%
3988398 304.26.1.1 ↗ a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP 0.67 59.0 5.53e-01 100.0% 83.2%
4027427 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.67 57.0 5.79e-01 97.4% 100.0%
3639504 305.2.1.1 ↗ a+b two layers › DCoH-like › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin_4a 0.67 55.0 4.96e-01 93.4% 70.0%
3615512 305.2.1.0 ↗ a+b two layers › DCoH-like › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) 0.66 55.0 4.83e-01 94.7% 63.3%
5014123 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.66 57.0 5.59e-01 100.0% 90.6%
4603561 304.14.1.1 ↗ a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.66 56.0 5.57e-01 100.0% 93.8%
4929272 304.22.1.0 ↗ a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain 0.64 56.0 5.57e-01 100.0% 93.8%
3164039 304.14.1.1 ↗ a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.64 52.0 5.27e-01 100.0% 93.2%
4275741 304.110.1.4 ↗ a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › UPF0176_N 0.63 53.0 5.10e-01 100.0% 81.1%
3972855 304.14.1.1 ↗ a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.63 53.0 5.37e-01 100.0% 98.7%
4944623 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.63 53.0 4.95e-01 100.0% 74.0%
4217761 304.14.1.1 ↗ a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.62 53.0 5.26e-01 100.0% 94.9%
157953 304.14.1.1 ↗ a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.61 51.0 5.05e-01 100.0% 88.6%
3976762 304.14.1.1 ↗ a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.61 52.0 5.25e-01 98.7% 98.7%
3603717 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.60 41.0 4.07e-01 73.7% 67.5%
4042831 304.110.1.4 ↗ a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › UPF0176_N 0.60 52.0 4.89e-01 100.0% 81.1%
3877589 327.16.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system 0.57 41.0 4.46e-01 81.6% 98.3%
3971740 210.1.3.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.55 45.0 3.48e-01 92.1% 89.2%
D6 medium residues 548-611
PDB
Domain cluster: rep: hypothetical_protein_2__YP_009337657__Changjiang_tombus-like_virus_11__1922804__D27-99
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00998.29 best RdRP_3 82.4 4.10e-23 100.0% 13.4%