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RNA-dependent_RNA_polymerase
Euk-VirVanilla_virus_X
RNA-dependent_RNA_polymerase__YP_009389479__Vanilla_virus_X__2016427
Identity
- Accession:
- YP_009389479 ↗
- Protein ID:
- RNA-dependent_RNA_polymerase
- Kingdom:
- euk
Quality
72.9
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Alsuviricetes›
Tymovirales›
Alphaflexiviridae›
Potexvirus›
Vanilla_virus_X
TaxID: 2016427
Cluster
View cluster (13 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 614-830
Domain cluster:
rep: p39__YP_004928123__Hibiscus_green_spot_virus_2__1513278__D5-179
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01443.25 best | Viral_helicase1 | 124.0 | 1.20e-35 | 62.7% | 55.7% |
D2
high
residues 846-950
Domain cluster:
rep: TGB1_protein__NP_619560__Garlic_latent_virus__12458__D129-228
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01443.25 best | Viral_helicase1 | 51.6 | 1.60e-13 | 77.1% | 30.7% |
D3
medium
residues 1-67
D4
medium
residues 68-269
Domain cluster:
rep: uncovered_polypeptide_polyprotein__YP_001086452_0-758__Chrysanthemum_virus_B__12165__D72-292
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01660.23 best | Vmethyltransf | 191.5 | 2.70e-56 | 100.0% | 72.0% |
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4obxA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.67 | 60.0 | 5.69e-01 | 95.0% | 96.6% |
| 2pjdA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.66 | 47.0 | 5.25e-01 | 93.6% | 93.6% |
| 2zw9B01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.65 | 60.0 | 5.05e-01 | 99.5% | 96.7% |
| 7cpxA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.65 | 58.0 | 4.85e-01 | 94.6% | 73.1% |
| 4qdjA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.65 | 53.0 | 5.32e-01 | 95.0% | 83.2% |
| 3bkwB00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.64 | 57.0 | 5.55e-01 | 92.6% | 100.0% |
| 4dzrA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.63 | 48.0 | 5.29e-01 | 95.0% | 96.9% |
| 3dh0B00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.63 | 54.0 | 5.54e-01 | 95.0% | 94.7% |
| 3mggB01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.63 | 49.0 | 5.46e-01 | 95.5% | 100.0% |
| 3gnlA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.63 | 49.0 | 5.39e-01 | 95.5% | 98.8% |
| 5eswB00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.62 | 44.0 | 4.56e-01 | 70.8% | 85.7% |
| 1jqdA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.62 | 55.0 | 4.88e-01 | 94.6% | 94.4% |
| 3cc8A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.62 | 55.0 | 5.43e-01 | 94.1% | 100.0% |
| 1vlmA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.62 | 55.0 | 5.50e-01 | 95.0% | 92.8% |
| 4i9fA02 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.59 | 34.0 | 4.37e-01 | 89.1% | 100.0% |
| 3ihtA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 45.0 | 4.94e-01 | 95.0% | 98.2% |
| 2rflH00 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.58 | 37.0 | 4.14e-01 | 89.6% | 81.4% |
| 1pq4A01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.57 | 34.0 | 3.89e-01 | 83.2% | 77.0% |
| 2yqzA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 49.0 | 5.00e-01 | 94.6% | 94.8% |
| 3hwwA01 | 3.40.50.970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.57 | 46.0 | 4.60e-01 | 99.5% | 83.3% |
| 1wp9A02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 37.0 | 4.24e-01 | 99.0% | 94.0% |
| 1pi3A01 | 3.40.50.970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.54 | 41.0 | 4.36e-01 | 96.0% | 90.4% |
| 7wkqB01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 47.0 | 4.72e-01 | 96.5% | 95.6% |
| 2f7lA03 | 3.40.120.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 | 0.53 | 25.0 | 3.29e-01 | 94.1% | 83.7% |
| 3i3wA01 | 3.40.120.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 | 0.53 | 30.0 | 3.45e-01 | 97.5% | 72.8% |
| 4krgA02 | 3.40.50.12180 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 47.0 | 4.72e-01 | 94.6% | 96.1% |
| 4ix1A00 | 3.40.50.12500 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 41.0 | 3.96e-01 | 85.6% | 91.5% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5030342 | 3110.1.1.0 ↗ | a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain | 0.70 | 36.0 | 5.00e-01 | 93.6% | 100.0% |
| 4988836 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.70 | 52.0 | 5.89e-01 | 94.6% | 100.0% |
| 5009911 | 2003.1.5.8 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Ubie_methyltran | 0.68 | 61.0 | 6.00e-01 | 94.6% | 93.0% |
| 5019216 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.66 | 56.0 | 5.76e-01 | 94.6% | 92.8% |
| 3802438 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.66 | 50.0 | 4.78e-01 | 95.5% | 67.7% |
| 5053540 | 2003.1.5.67 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_12 | 0.64 | 58.0 | 5.57e-01 | 94.6% | 94.2% |
| 3805802 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.63 | 49.0 | 4.89e-01 | 96.0% | 77.6% |
| 4960913 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.63 | 57.0 | 5.51e-01 | 94.6% | 87.3% |
| 3276032 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.63 | 57.0 | 3.77e-01 | 95.5% | 30.3% |
| 5010205 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.63 | 55.0 | 5.61e-01 | 95.5% | 95.4% |
| 3960615 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.63 | 54.0 | 5.68e-01 | 94.6% | 100.0% |
| 5041889 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.62 | 56.0 | 5.69e-01 | 95.0% | 98.0% |
| 5071772 | 3110.1.1.0 ↗ | a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain | 0.62 | 34.0 | 4.55e-01 | 95.0% | 100.0% |
| 5048307 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.62 | 55.0 | 5.13e-01 | 95.0% | 93.2% |
| 5076761 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.61 | 52.0 | 5.30e-01 | 89.6% | 100.0% |
| 4143957 | 7588.1.1.1 ↗ | a/b three-layered sandwiches › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › LYTB | 0.61 | 32.0 | 4.32e-01 | 88.6% | 100.0% |
| 5033275 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.60 | 54.0 | 4.75e-01 | 95.5% | 85.3% |
| 4434205 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.60 | 55.0 | 4.82e-01 | 98.5% | 93.0% |
| 5046388 | 3110.1.1.15 ↗ | a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › PF30772 | 0.60 | 36.0 | 4.51e-01 | 94.1% | 97.5% |
| 5050282 | 7584.1.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › AMP-binding | 0.60 | 45.0 | 4.44e-01 | 92.1% | 73.8% |
| 4927846 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.60 | 53.0 | 5.26e-01 | 95.0% | 89.8% |
| 4951431 | 2007.1.14.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Oxidored_nitro | 0.59 | 37.0 | 4.46e-01 | 95.5% | 93.3% |
| 5019368 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.59 | 52.0 | 5.12e-01 | 94.6% | 90.0% |
| 3397160 | 2007.1.2.30 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › IR75A_N | 0.59 | 45.0 | 4.76e-01 | 96.5% | 89.4% |
| 136182 | 2003.1.5.77 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_17 | 0.58 | 45.0 | 4.94e-01 | 95.0% | 98.2% |
| 3197097 | 2003.1.5.67 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_12 | 0.58 | 51.0 | 4.41e-01 | 94.6% | 98.1% |
| 4972922 | 7574.1.1.0 ↗ | a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) | 0.56 | 42.0 | 4.30e-01 | 96.0% | 79.0% |
| None | — | 0.55 | 41.0 | 4.24e-01 | 87.6% | 82.2% | |
| 3926234 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.55 | 46.0 | 4.43e-01 | 92.1% | 78.2% |
| 4078660 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.55 | 48.0 | 4.91e-01 | 92.6% | 97.4% |
| 4405106 | 7574.1.1.5 ↗ | a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › TPP_enzyme_C | 0.54 | 50.0 | 4.28e-01 | 99.5% | 95.6% |
| 3897495 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 21.0 | 2.60e-01 | 82.7% | 51.5% |
| 4998836 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.53 | 46.0 | 4.50e-01 | 93.1% | 94.5% |
| 3677415 | 331.4.1.2 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF | 0.52 | 26.0 | 3.33e-01 | 91.1% | 80.0% |
| 3846631 | 2003.1.5.131 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MSS51_C | 0.52 | 45.0 | 3.91e-01 | 94.1% | 63.2% |
| 3638728 | 7577.1.1.1 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 | 0.51 | 48.0 | 3.94e-01 | 100.0% | 73.2% |
| 3947053 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.51 | 25.0 | 3.48e-01 | 89.1% | 98.9% |
| 3783931 | 7577.1.1.1 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 | 0.51 | 47.0 | 3.64e-01 | 100.0% | 58.7% |
| 4928062 | 2003.1.5.23 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_4 | 0.51 | 41.0 | 4.34e-01 | 91.1% | 95.5% |
| 5057987 | 7577.1.1.1 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 | 0.51 | 47.0 | 4.30e-01 | 100.0% | 93.2% |
D5
medium
residues 270-322
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01660.23 best | Vmethyltransf | 40.5 | 2.60e-10 | 100.0% | 17.0% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3gzsA00 | 1.25.40.390 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.66 | 45.0 | 2.62e-01 | 71.7% | 7.7% |
| 2damA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.65 | 46.0 | 4.28e-01 | 75.5% | 62.7% |
| 1ynjJ01 | 1.10.1790.20 | Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › | 0.61 | 46.0 | 3.53e-01 | 79.2% | 75.0% |
| 3hh0A02 | 6.10.250.360 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.61 | 49.0 | 4.69e-01 | 100.0% | 75.8% |
| 3nm6B00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.57 | 44.0 | 2.96e-01 | 88.7% | 59.8% |
| 7x4oB01 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.56 | 47.0 | 3.75e-01 | 96.2% | 91.0% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3730451 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.67 | 56.0 | 4.92e-01 | 96.2% | 62.5% |
| 3819120 | 101.1.2.120 ↗ | alpha arrays › HTH › HTH › winged helix domain › DDRGK | 0.64 | 56.0 | 4.54e-01 | 100.0% | 77.1% |
| 3596115 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 54.0 | 4.05e-01 | 100.0% | 82.4% |
| 4002681 | 377.1.2.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger | 0.54 | 39.0 | 3.33e-01 | 77.4% | 51.1% |
| 3945393 | 7089.1.1.2 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › DUF5405 | 0.53 | 47.0 | 4.10e-01 | 98.1% | 80.0% |
| 3619859 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.53 | 41.0 | 3.35e-01 | 94.3% | 80.8% |
| 4197479 | 2007.1.1.11 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › Peptidase_C26 | 0.50 | 40.0 | 2.75e-01 | 98.1% | 88.9% |
D6
medium
residues 1000-1035_1086-1169
Domain cluster:
rep: RdRp__YP_006908997__Diuris_virus_A__1247115__D19-40_76-171
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3250871 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.61 | 42.0 | 3.87e-01 | 70.0% | 68.0% |
| 2757968 | 304.48.1.12 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Mononeg_RNA_pol | 0.56 | 38.0 | 3.09e-01 | 70.0% | 56.4% |
| 3651623 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.54 | 45.0 | 3.58e-01 | 90.0% | 59.2% |
D7
medium
residues 1036-1085_1170-1188_1209-1283
D8
medium
residues 1189-1208_1284-1328
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2rilA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.68 | 55.0 | 4.83e-01 | 87.7% | 96.8% |
| 2qv6A01 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.68 | 54.0 | 4.35e-01 | 87.7% | 76.6% |
| 2x3gA00 | 3.30.70.1910 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.66 | 58.0 | 4.85e-01 | 100.0% | 84.5% |
| 1o51A00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 50.0 | 4.52e-01 | 83.1% | 96.6% |
| 3nrbB01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.60 | 46.0 | 4.28e-01 | 83.1% | 100.0% |
| 4qjvA03 | 3.30.70.3110 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 44.0 | 4.58e-01 | 80.0% | 100.0% |
| 1h3dA03 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 42.0 | 4.19e-01 | 76.9% | 97.0% |
| 3mahA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.58 | 40.0 | 3.92e-01 | 70.8% | 100.0% |
| 3o1lB01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.57 | 48.0 | 4.39e-01 | 95.4% | 100.0% |
| 2nydA02 | 2.20.28.300 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.57 | 34.0 | 3.93e-01 | 81.5% | 92.7% |
| 2nyiA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.57 | 44.0 | 4.10e-01 | 84.6% | 100.0% |
| 2jveA00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.56 | 42.0 | 4.14e-01 | 100.0% | 74.6% |
| 2j8bA00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.55 | 43.0 | 4.06e-01 | 100.0% | 70.5% |
| 3pv7A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 44.0 | 3.68e-01 | 90.8% | 62.7% |
| 2f06A00 | 3.30.2130.10 | Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like | 0.54 | 42.0 | 3.31e-01 | 86.2% | 81.9% |
| 1earA02 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.54 | 41.0 | 4.03e-01 | 83.1% | 88.4% |
| 2n99A00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.53 | 43.0 | 4.15e-01 | 100.0% | 76.3% |
| 1fmd200 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 43.0 | 3.06e-01 | 93.8% | 80.3% |
| 4u33A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 42.0 | 3.52e-01 | 89.2% | 55.0% |
| 1yhpA02 | 2.60.40.1720 | Mainly Beta › Sandwich › Immunoglobulin-like › Calcium-dependent cell adhesion molecule-1 | 0.51 | 38.0 | 3.18e-01 | 89.2% | 44.2% |
| 3n28A02 | 3.30.70.2020 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 43.0 | 3.76e-01 | 100.0% | 73.6% |
| 2muoA00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.51 | 44.0 | 4.12e-01 | 100.0% | 87.8% |
| 2jheA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.50 | 36.0 | 3.47e-01 | 80.0% | 100.0% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3936822 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.59 | 45.0 | 4.41e-01 | 100.0% | 75.7% |
| 5004481 | 304.11.1.16 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase › DUF2110_C | 0.59 | 45.0 | 4.27e-01 | 83.1% | 89.9% |
| 3974593 | 304.4.1.1 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg | 0.58 | 46.0 | 4.29e-01 | 89.2% | 96.5% |
| 3972551 | 304.4.1.59 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › WCX | 0.58 | 41.0 | 4.00e-01 | 76.9% | 82.7% |
| 3857592 | 382.1.1.1 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 | 0.58 | 51.0 | 4.59e-01 | 100.0% | 77.8% |
| 5023503 | 304.110.1.0 ↗ | a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like | 0.57 | 44.0 | 4.34e-01 | 84.6% | 97.1% |
| 162851 | 304.8.1.9 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_6 | 0.57 | 44.0 | 4.10e-01 | 84.6% | 100.0% |
| 4882532 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.56 | 48.0 | 3.14e-01 | 100.0% | 54.6% |
| 4537345 | 304.4.1.1 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg | 0.56 | 45.0 | 4.23e-01 | 92.3% | 97.6% |
| 4400469 | 101.1.2.841 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF27221 | 0.56 | 46.0 | 3.48e-01 | 90.8% | 79.1% |
| 3746678 | 382.1.1.16 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › CD59 | 0.55 | 43.0 | 4.13e-01 | 100.0% | 73.3% |
| 3435159 | 304.4.1.55 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › GUB_WAK_bind | 0.55 | 44.0 | 3.33e-01 | 87.7% | 54.1% |
| 3554291 | 382.1.1.16 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › CD59 | 0.55 | 43.0 | 3.98e-01 | 100.0% | 66.3% |
| 3863856 | 382.1.1.16 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › CD59 | 0.55 | 43.0 | 4.02e-01 | 100.0% | 68.8% |
| 4930197 | 304.33.1.1 ↗ | a+b two layers › Alpha-beta plaits › CheY-binding domain of CheA › CheY-binding domain of CheA › P2 | 0.55 | 46.0 | 4.01e-01 | 93.8% | 91.0% |
| 3784654 | 304.8.1.1 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Thr_dehydrat_C | 0.55 | 47.0 | 4.23e-01 | 100.0% | 94.7% |
| 3601206 | 304.120.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI | 0.54 | 40.0 | 3.88e-01 | 81.5% | 100.0% |
| 4102298 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.53 | 40.0 | 3.88e-01 | 83.1% | 93.3% |
| 4215974 | 304.22.1.1 ↗ | a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C | 0.53 | 43.0 | 4.23e-01 | 89.2% | 94.3% |
| 3794970 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.52 | 39.0 | 3.53e-01 | 89.2% | 85.7% |
| 5293 | 304.22.1.1 ↗ | a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C | 0.52 | 41.0 | 4.13e-01 | 89.2% | 88.2% |
| 4524153 | 304.22.1.1 ↗ | a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C | 0.51 | 42.0 | 3.86e-01 | 90.8% | 83.5% |
| 4965698 | 304.22.1.0 ↗ | a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain | 0.51 | 41.0 | 3.89e-01 | 90.8% | 91.3% |
| 3563222 | 11.1.1.1001 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26201 | 0.51 | 41.0 | 3.40e-01 | 89.2% | 58.3% |
| 3173238 | 11.1.5.7 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Adap_comp_sub | 0.51 | 38.0 | 3.10e-01 | 80.0% | 68.3% |
| 5078772 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.50 | 35.0 | 3.57e-01 | 76.9% | 100.0% |