←Back to structures

RNA-dependent_RNA_polymerase

Euk-Vir

Heterobasidion_partitivirus_7

RNA-dependent_RNA_polymerase__YP_009408640__Heterobasidion_partitivirus_7__1387301

Identity

Accession:: YP_009408640 ↗
Protein ID:: RNA-dependent_RNA_polymerase
Kingdom:: euk

Quality

74.6 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Duplopiviricetes› Durnavirales› Partitiviridae› Betapartitivirus› Heterobasidion_partitivirus_7

TaxID: 1387301

Cluster

View cluster (450 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 567-678

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_007889823__Red_clover_cryptic_virus_2__1323524__D588-687

D2 medium residues 1-79

PDB

D3 medium residues 80-145_274-320

PDB

Domain cluster: rep: putative_RNA-dependent_RNA_polymerase__YP_003104768__Primula_malacoides_virus_China_Mar2007__479713__D102-183_314-331

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2k4vA00	3.30.160.370	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064	0.51	28.0	2.77e-01	77.9%	47.2%

D4 medium residues 146-175_356-458

PDB

Domain cluster: rep: putative_RNA-dependent_RNA_polymerase__YP_009551641__Bipolaris_maydis_partitivirus_2__2483307__D152-162_339-437

CATH (17)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1x4tA01	1.10.287.660	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.66	30.0	4.38e-01	77.4%	96.6%
4fppB01	1.10.287.130	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain	0.64	29.0	3.85e-01	76.7%	78.9%
2x2vA00	1.20.20.10	Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C	0.60	30.0	4.02e-01	77.4%	92.6%
2ic6A00	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.59	30.0	4.05e-01	77.4%	93.0%
5svlA01	1.10.287.940	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel	0.58	30.0	4.22e-01	89.5%	100.0%
4gltA02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.58	28.0	3.07e-01	77.4%	52.6%
1z0pA00	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.58	29.0	3.77e-01	70.7%	86.3%
3h6pC00	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.57	26.0	3.71e-01	76.7%	100.0%
4q20A01	1.10.287.130	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain	0.56	30.0	3.61e-01	75.2%	81.7%
1zpyA00	6.10.140.1960	Special › Helix non-globular › Helix Hairpins ›	0.54	29.0	3.50e-01	94.0%	76.9%
1fpoC02	1.20.1280.20	Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain	0.53	32.0	3.88e-01	82.7%	89.0%
3r2qA02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.53	28.0	3.06e-01	93.2%	59.3%
1ydxA02	1.10.287.1120	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein	0.52	29.0	3.50e-01	72.2%	82.2%
3l9fA02	6.10.140.1570	Special › Helix non-globular › Helix Hairpins ›	0.51	31.0	3.93e-01	82.0%	100.0%
2kz5A00	1.10.880.10	Mainly Alpha › Orthogonal Bundle › Transcription Factor Skn-1; Chain P › Transcription factor, Skn-1-like, DNA-binding domain	0.51	28.0	3.23e-01	89.5%	74.7%
2l3lA01	1.20.58.1250	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tubulin Binding Cofactor C, N-terminal domain	0.50	28.0	3.10e-01	85.0%	66.0%
2v6yA00	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.50	23.0	3.10e-01	85.7%	78.7%

ECOD (17)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3296414	192.29.1.168 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF641	0.65	31.0	4.13e-01	77.4%	84.3%
3336677	605.1.1.132 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › DUF641	0.63	30.0	3.92e-01	71.4%	80.0%
3802185	192.8.1.359 ↗	alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › DUF641	0.62	31.0	4.14e-01	77.4%	90.0%
4296017	632.22.1.1 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › EzrA	0.61	32.0	3.24e-01	77.4%	50.0%
4397870	3456.1.1.1 ↗	extended segments › NADH-quinone oxidoreductase subunit A › NADH-quinone oxidoreductase subunit A › NADH-quinone oxidoreductase subunit A › Oxidored_q4	0.61	30.0	3.26e-01	77.4%	53.9%
4943532	605.1.1.0 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase	0.60	30.0	4.06e-01	77.4%	91.4%
3738041	192.5.1.1 ↗	alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1	0.59	30.0	3.71e-01	77.4%	76.5%
3412574	3291.1.1.82 ↗	alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › ING	0.59	31.0	3.14e-01	75.2%	50.8%
3966985	3922.1.1.19 ↗	alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › DUF1090	0.59	30.0	3.32e-01	77.4%	60.6%
1153944	109.1.1.6 ↗	alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C_2	0.58	28.0	2.94e-01	77.4%	48.0%
4012407	605.1.1.0 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase	0.57	28.0	3.81e-01	75.9%	100.0%
3283686	605.1.1.0 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase	0.56	28.0	3.66e-01	77.4%	87.1%
3917888	192.7.1.0 ↗	alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm	0.56	30.0	3.29e-01	77.4%	60.9%
3634706	601.1.2.94 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › VBS_C3G9	0.56	30.0	3.54e-01	72.9%	75.6%
4867087	192.3.1.1 ↗	alpha bundles › Long alpha-hairpin › Fe,Mn superoxide dismutase (SOD), N-terminal domain › Fe,Mn superoxide dismutase (SOD), N-terminal domain › Sod_Fe_N	0.55	29.0	3.56e-01	77.4%	79.5%
3438255	622.4.1.0 ↗	alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related	0.55	30.0	3.95e-01	82.0%	96.0%
3600104	622.1.1.0 ↗	alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain	0.52	32.0	3.44e-01	82.7%	70.3%

D5 medium residues 176-273

PDB

D6 medium residues 321-355_459-566

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009337040__Changjiang_tombus-like_virus_21__1922815__D1-47_99-181

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	30.3	2.70e-07	88.1%	23.1%