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RNA-dependent_RNA_polymerase

Euk-Vir

Heterobasidion_partitivirus_8

RNA-dependent_RNA_polymerase__YP_009508063__Heterobasidion_partitivirus_8__1249677

Identity

Accession:
YP_009508063 ↗
Protein ID:
RNA-dependent_RNA_polymerase
Kingdom:
euk

Quality

77.1 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Duplopiviricetes› Durnavirales› Partitiviridae› Betapartitivirus› Heterobasidion_partitivirus_8

TaxID: 1249677

Cluster

View cluster (450 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 87-174_278-315_407-447
PDB
Domain cluster: rep: putative_RNA-dependent_RNA_polymerase__YP_392480__Rosellinia_necatrix_partitivirus_1-W8__235994__D89-160_291-314_420-454
D2 medium residues 175-277_316-336
PDB
Domain cluster: representative
D3 medium residues 337-406_448-552
PDB
Domain cluster: rep: hypothetical_protein_2__YP_009337040__Changjiang_tombus-like_virus_21__1922815__D1-47_99-181
D4 medium residues 553-654
PDB
Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_007889823__Red_clover_cryptic_virus_2__1323524__D588-687
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pusA04 6.10.140.300 Special › Helix non-globular › Helix Hairpins › 0.64 58.0 5.69e-01 99.0% 98.1%
1f16A00 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.63 45.0 3.66e-01 74.5% 49.5%
2r5sA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.62 43.0 4.56e-01 96.1% 81.8%
1vb5A01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.54 41.0 4.22e-01 99.0% 86.2%
4a25B01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.54 44.0 3.76e-01 86.3% 87.0%
3zheA02 1.25.40.760 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.54 43.0 3.54e-01 89.2% 71.5%
2d2sA01 1.20.58.1210 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, N-terminal helical domain 0.53 43.0 4.17e-01 87.3% 76.7%
3zdrA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.53 43.0 3.48e-01 90.2% 91.4%
3onkA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.53 46.0 4.25e-01 100.0% 78.8%
2xzeB00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.52 37.0 3.39e-01 77.5% 55.1%
1lvfB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 39.0 3.96e-01 79.4% 93.3%
1iq0A03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.51 38.0 3.69e-01 79.4% 74.1%
2f07B00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 41.0 3.36e-01 89.2% 89.8%
1mtpA01 3.30.497.10 Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 0.50 41.0 3.28e-01 92.2% 84.6%
2dnxA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.50 38.0 3.53e-01 80.4% 78.5%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5000604 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.71 51.0 3.71e-01 93.1% 28.3%
4949691 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.70 53.0 4.42e-01 96.1% 47.1%
3606790 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.60 48.0 5.04e-01 93.1% 96.7%
5024540 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.60 45.0 4.01e-01 79.4% 91.0%
3933426 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 42.0 4.31e-01 95.1% 77.9%
3731571 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 49.0 4.05e-01 96.1% 50.3%
3966605 601.4.1.84 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › KinB_sensor 0.58 43.0 4.05e-01 83.3% 65.8%
3515234 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.57 49.0 4.35e-01 97.1% 65.5%
4317199 603.5.1.1 ↗ alpha bundles › STAT-like › FlgN-like › FlgN-like › FlgN 0.56 44.0 4.11e-01 83.3% 78.4%
4192699 603.5.1.1 ↗ alpha bundles › STAT-like › FlgN-like › FlgN-like › FlgN 0.56 43.0 3.97e-01 81.4% 76.9%
4987279 3352.1.1.0 ↗ alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain 0.55 39.0 2.71e-01 72.5% 39.4%
3831093 109.4.1.1490 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MOR2-PAG1_C, MOR2-PAG1_mid 0.55 48.0 3.73e-01 100.0% 73.2%
3632024 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 40.0 3.71e-01 96.1% 60.0%
3702681 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 44.0 3.29e-01 99.0% 34.3%
4015775 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 43.0 3.40e-01 95.1% 42.4%
3571073 633.12.1.11 ↗ alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like › TRP_2 0.53 40.0 4.18e-01 80.4% 94.7%
3962246 206.1.1.153 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › FhuF_C 0.52 40.0 3.28e-01 85.3% 94.0%
3389152 604.6.1.0 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.50 41.0 3.89e-01 94.1% 92.3%