RNA-dependent_RNA_polymerase

Euk-Vir

Beet_cryptic_virus_2

RNA-dependent_RNA_polymerase__YP_009508068__Beet_cryptic_virus_2__912029

Identity

93.7 mean pLDDT

View cluster (450 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 38-61_405-470

PDB

Domain cluster: rep: RdRp__YP_009329866__Wuhan_large_pig_roundworm_virus_1__1923741__D24-47_379-435

D2 medium residues 83-105_222-258_321-404

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009337040__Changjiang_tombus-like_virus_21__1922815__D1-47_99-181

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	47.4	1.70e-12	56.9%	20.4%

D3 medium residues 106-121_175-221_259-320

PDB

Domain cluster: rep: putative_RNA-dependent_RNA_polymerase__YP_009466859__Pepper_cryptic_virus_1__369643__D66-82_179-212_266-317

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	48.2	9.70e-13	50.4%	13.3%

D4 medium residues 122-174

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3h51A00	3.10.450.50	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.53	43.0	3.34e-01	100.0%	66.9%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3169777	109.4.1.543 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › efThoc1	0.63	48.0	3.22e-01	84.9%	27.7%
5054045	2498.2.1.6 ↗	mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain › S_layer_C	0.53	43.0	3.68e-01	100.0%	82.0%