RNA-dependent_RNA_polymerase

Euk-Vir

Cape_gooseberry_ilarvirus_1

RNA-dependent_RNA_polymerase__YP_009551513__Cape_gooseberry_ilarvirus_1__2116599

Identity

69.4 mean pLDDT

Orthornavirae› Kitrinoviricota› Alsuviricetes› Martellivirales› Bromoviridae› Ilarvirus› Cape_gooseberry_ilarvirus_1

TaxID: 2116599

View cluster (23 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-65

PDB

D2 medium residues 213-250_594-662

PDB

Domain cluster: rep: unnamed_protein_product__YP_009551615__Apple_necrotic_mosaic_virus__1779339__D279-324_677-773

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00978.27 best	RdRP_2	53.6	2.50e-14	71.0%	15.0%

D3 medium residues 291-316_376-409

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00978.27 best	RdRP_2	42.0	8.50e-11	65.0%	8.6%
PF00978.27	RdRP_2	27.2	2.50e-06	45.0%	5.7%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3239489	5001.1.1.41 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw	0.51	37.0	2.39e-01	81.7%	30.4%
3585425	101.1.2.98 ↗	alpha arrays › HTH › HTH › winged helix domain › CDT1	0.51	37.0	3.29e-01	81.7%	65.3%

D4 medium residues 317-375_410-431_471-535

PDB

Domain cluster: rep: hypothetical_protein_3__YP_009345007__Wuhan_spider_virus_8__1923757__D1-105_147-200

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00978.27 best	RdRP_2	84.0	1.50e-23	44.5%	14.8%

D5 medium residues 432-470_536-593

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009337040__Changjiang_tombus-like_virus_21__1922815__D1-47_99-181

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00978.27 best	RdRP_2	47.7	1.50e-12	60.8%	12.5%
PF00978.27	RdRP_2	27.3	2.30e-06	42.3%	8.9%

D6 medium residues 663-717

PDB

Domain cluster: representative