RNA-dependent_RNA_polymerase

Euk-Vir

Penicillium_digitatum_polymycoviruses_1

RNA-dependent_RNA_polymerase__YP_009551548__Penicillium_digitatum_polymycoviruses_1__2164101

Identity

84.5 mean pLDDT

View cluster (51 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 588-757

PDB

Domain cluster: rep: RNA_dependent_RNA_polymerase__YP_009352879__Beauveria_bassiana_polymycovirus_1__1740646__D597-774

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3l09A01	1.20.58.1460	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.52	31.0	3.91e-01	89.4%	100.0%

D2 medium residues 14-73

PDB

D3 medium residues 96-138

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2hkeA02	3.30.70.890	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain	0.57	43.0	2.90e-01	90.7%	21.9%
2ql2B00	4.10.280.10	Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain	0.53	35.0	3.20e-01	83.7%	49.2%
6whcA00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.51	42.0	2.78e-01	100.0%	53.0%
4dvgB00	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.51	39.0	2.49e-01	100.0%	24.3%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3818560	109.4.1.32 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G	0.62	47.0	3.17e-01	90.7%	24.6%
3261517	5081.1.1.4 ↗	alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › DUF1751	0.58	47.0	3.26e-01	95.3%	27.1%
3670994	2003.1.1.134 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Exostosin_GT47	0.54	42.0	2.94e-01	100.0%	60.6%
1223569	225.1.1.3 ↗	a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c	0.54	37.0	2.73e-01	100.0%	22.7%
6852	223.1.1.4 ↗	a+b three layers › Profilin-like › sensor domains › sensor domains › IclR	0.51	40.0	2.72e-01	93.0%	95.0%

D4 medium residues 139-220_321-349_464-485

PDB

Domain cluster: representative

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1279063	304.48.1.13 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Flavi_NS5	0.60	52.0	3.69e-01	96.2%	76.9%

D5 medium residues 221-320_350-373_420-463

PDB

Domain cluster: rep: RNA-dependent_RNA-polymerase__YP_010086037__Fusarium_redolens_polymycovirus_1__2546034__D254-329_361-388_425-474

D6 medium residues 374-419_486-587

PDB

Domain cluster: rep: ORF1a__YP_010086046__Magnaporthe_oryzae_polymycovirus_1__2509266__D207-227_376-425_521-587