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RNA-dependent_RNA_polymerase

Euk-Vir

Gigaspora_margarita_mitovirus_3

RNA-dependent_RNA_polymerase__YP_009551960__Gigaspora_margarita_mitovirus_3__2082667

Identity

Accession:
YP_009551960 ↗
Protein ID:
RNA-dependent_RNA_polymerase
Kingdom:
euk

Quality

45.7 mean pLDDT

Taxonomy

Orthornavirae› Lenarviricota› Howeltoviricetes› Cryppavirales› Mitoviridae› Duamitovirus› Gigaspora_margarita_mitovirus_3

TaxID: 2082667

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 32-115_166-189
PDB
D2 medium residues 190-308
PDB
D3 medium residues 309-434
PDB
D4 medium residues 435-512
PDB
D5 medium residues 513-566_596-650_687-711_993-1010
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05919.17 best Mitovir_RNA_pol 36.1 5.70e-09 27.6% 6.2%
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7uinD01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.56 43.0 4.16e-01 79.6% 91.6%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3810170 304.48.1.43 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Mitovir_RNA_pol 0.83 60.0 5.64e-01 74.3% 92.8%
3336938 304.48.1.43 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Mitovir_RNA_pol 0.74 61.0 4.99e-01 84.2% 69.2%
5000633 239.5.1.1 ↗ beta barrels › Ribosomal protein L25-like › 40S ribosomal protein S3A N-terminal domain › 40S ribosomal protein S3A N-terminal domain › Ribosomal_S3Ae 0.51 23.0 2.89e-01 100.0% 67.8%
D6 medium residues 567-595_651-686
PDB
Domain cluster: representative
D7 medium residues 712-842
PDB