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RNA-dependent_RNA_polymerase

Euk-Vir

Rhizoctonia_mitovirus_1

RNA-dependent_RNA_polymerase__YP_009551966__Rhizoctonia_mitovirus_1__2421278

Identity

Accession:: YP_009551966 ↗
Protein ID:: RNA-dependent_RNA_polymerase
Kingdom:: euk

Quality

60.2 mean pLDDT

Taxonomy

Orthornavirae› Lenarviricota› Howeltoviricetes› Cryppavirales› Mitoviridae› Mitovirus› Rhizoctonia_mitovirus_1

TaxID: 2421278

Cluster

View cluster (4 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 47-175

PDB

D2 medium residues 182-223_295-339_377-428

PDB

Domain cluster: rep: RNA_dependent_RNA_polymerase__YP_005352912__Clitocybe_odora_virus__1162083__D188-234_322-366_403-448

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05919.17 best	Mitovir_RNA_pol	26.9	3.50e-06	51.1%	9.0%
PF05919.17	Mitovir_RNA_pol	49.9	3.60e-13	37.4%	10.3%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1mukA02	3.90.1850.10	Alpha Beta › Alpha-Beta Complex › RNA-directed RNA polymerase lambda-3 › RNA-directed RNA polymerase lambda-3	0.73	67.0	4.50e-01	100.0%	59.4%
2r7rA05	1.10.357.80	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 ›	0.68	62.0	5.71e-01	100.0%	98.3%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3589612	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.79	61.0	4.50e-01	79.9%	63.6%
4497954	304.48.1.73 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1, RVT_N	0.79	61.0	4.57e-01	79.9%	66.8%
4461237	4967.1.1.0 ↗	alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases	0.77	59.0	3.91e-01	79.9%	38.8%
5018583	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.77	60.0	4.46e-01	80.6%	62.9%
4152428	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.76	54.0	3.92e-01	71.9%	57.7%
4004424	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.75	59.0	4.22e-01	81.3%	56.0%
3945039	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.75	58.0	4.34e-01	81.3%	61.5%
1697857	304.48.1.30 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › CPV_RdRP_pol_dom	0.70	64.0	4.79e-01	100.0%	78.0%
4068028	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.70	52.0	3.99e-01	75.5%	69.7%
4434853	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.69	52.0	4.27e-01	77.7%	64.6%
5002351	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.69	54.0	3.91e-01	81.3%	55.5%
4070164	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.68	56.0	4.11e-01	87.1%	50.8%
4262041	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.68	51.0	4.12e-01	77.7%	64.3%
1827765	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.61	46.0	3.56e-01	77.7%	67.7%

D3 medium residues 224-294

PDB

D4 medium residues 340-376_429-518

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009272901__Fusarium_poae_mitovirus_4__1848153__D300-342_409-485

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05919.17 best	Mitovir_RNA_pol	104.8	8.50e-30	70.1%	13.9%
PF05919.17	Mitovir_RNA_pol	31.3	1.60e-07	29.1%	7.0%

D5 medium residues 564-589_602-706

PDB

D6 medium residues 756-810

PDB