RNA-dependent_RNA_polymerase

Euk-Vir

Arracacha_virus_1

RNA-dependent_RNA_polymerase__YP_009551994__Arracacha_virus_1__2201042

Identity

82.9 mean pLDDT

Orthornavirae› Kitrinoviricota› Alsuviricetes› Martellivirales› Closteroviridae› Closterovirus› Arracacha_virus_1

TaxID: 2201042

View cluster (450 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 69-99_168-189_224-262

PDB

Domain cluster: rep: ORF_1b__YP_003289291__Strawberry_pallidosis-associated_virus__227507__D117-174_213-235_276-309

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00978.27 best	RdRP_2	40.9	1.70e-10	44.6%	8.4%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6zd1A01	1.10.132.70	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 ›	0.53	43.0	3.71e-01	92.4%	96.2%
2j0jA02	1.20.80.10	Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein ›	0.52	39.0	3.60e-01	81.5%	63.1%

D2 medium residues 190-223_288-364

PDB

Domain cluster: rep: RdRp,_partial__YP_008858531__Carnation_yellow_fleck_virus__940280__D190-234_286-374

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00978.27 best	RdRP_2	79.6	3.20e-22	73.0%	17.1%

D3 medium residues 365-445

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase,_partial__YP_009241367__Grapevine_leafroll-associated_virus_13__1815581__D413-491

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00978.27 best	RdRP_2	68.0	1.10e-18	100.0%	18.4%