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RNA-dependent_RNA_polymerase

Euk-Vir

Pythium_polare_RNA_virus_1

RNA-dependent_RNA_polymerase__YP_009552275__Pythium_polare_RNA_virus_1__2137353

Identity

Accession:
YP_009552275 ↗
Protein ID:
RNA-dependent_RNA_polymerase
Kingdom:
euk

Quality

71.1 mean pLDDT

Cluster

View cluster (16 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 36-132
PDB
D2 medium residues 133-282_330-382
PDB
Domain cluster: rep: hypothetical_protein_2__YP_009336713__Beihai_toti-like_virus_4__1922734__D167-187_213-323_360-427
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2r7rA05 1.10.357.80 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.64 52.0 5.58e-01 98.5% 97.2%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4941947 3651.1.1.1 ↗ alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B 0.60 26.0 3.07e-01 81.3% 57.1%
4980128 3651.1.1.1 ↗ alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B 0.60 26.0 3.08e-01 81.3% 57.1%
2430288 3651.1.1.1 ↗ alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B 0.53 24.0 2.85e-01 79.8% 58.6%
3320200 109.4.1.70 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CID 0.50 23.0 2.71e-01 80.3% 58.5%
1189897 3651.1.1.1 ↗ alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B 0.50 22.0 2.64e-01 74.9% 59.1%
D3 medium residues 283-329_383-471
PDB
Domain cluster: rep: hypothetical_protein_2__YP_009336893__Sanxia_water_strider_virus_20__1923404__D285-322_387-475
D4 medium residues 472-563_603-623
PDB
D5 medium residues 624-725
PDB