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RNA-dependent_RNA_polymerase

Euk-Vir

Fusarium_asiaticum_victorivirus_1

RNA-dependent_RNA_polymerase__YP_009552778__Fusarium_asiaticum_victorivirus_1__2268743

Identity

Accession:: YP_009552778 ↗
Protein ID:: RNA-dependent_RNA_polymerase
Kingdom:: euk

Quality

91.2 mean pLDDT

Cluster

View cluster (56 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-86

PDB

Domain cluster: rep: putative_RNA-dependent_RNA_polymerase__YP_009553478__Alternaria_arborescens_victorivirus_1__1728964__D3-76

D2 high residues 115-248

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase__NP_624323__Trichomonas_vaginalis_virus_2__674954__D796-923

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02123.22 best	RdRP_4	35.2	1.00e-08	93.3%	25.4%

D3 medium residues 249-273_295-397_438-492

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009336713__Beihai_toti-like_virus_4__1922734__D167-187_213-323_360-427

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02123.22 best	RdRP_4	94.5	1.00e-26	62.8%	22.1%
PF02123.22	RdRP_4	37.7	1.80e-09	30.0%	12.5%

D4 medium residues 274-294_398-437_493-572

PDB

Domain cluster: rep: KR816341.1__AKQ06880.1__X__00021__D162-195_238-325

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02123.22 best	RdRP_4	87.4	1.40e-24	57.5%	16.8%
PF02123.22	RdRP_4	28.8	8.60e-07	37.6%	8.6%

D5 medium residues 573-675_733-749

PDB

Domain cluster: representative

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3nkyA03	1.20.960.20	Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A ›	0.57	34.0	4.09e-01	89.2%	95.9%
3ecsC01	1.20.120.1070	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Translation initiation factor eIF-2B, N-terminal domain	0.53	38.0	4.11e-01	74.2%	100.0%
2iecD00	3.30.1300.20	Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 7,8-dihydroneopterin aldolase (MptD)	0.51	35.0	3.59e-01	70.0%	100.0%
3c02A00	1.20.1080.10	Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein.	0.51	37.0	2.98e-01	75.0%	92.6%
3q9dB01	1.20.58.1050	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.50	35.0	3.98e-01	85.8%	95.5%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3821959	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.52	37.0	3.54e-01	72.5%	76.4%

D6 medium residues 676-732

PDB

Domain cluster: representative

D7 medium residues 750-842

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3r44A01	3.40.50.12780	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain	0.50	41.0	2.79e-01	94.6%	49.9%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
None	—		0.53	42.0	3.02e-01	87.1%	80.7%
3587972	7515.1.1.2 ↗	a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase	0.53	40.0	2.69e-01	81.7%	98.8%
3786239	7577.1.1.1 ↗	a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2	0.51	41.0	2.95e-01	87.1%	92.0%