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RNA-dependent_RNA_polymerase
Euk-VirAlternaria_alternata_chrysovirus_1
RNA-dependent_RNA_polymerase__YP_009553287__Alternaria_alternata_chrysovirus_1__2066695
Identity
- Accession:
- YP_009553287 ↗
- Protein ID:
- RNA-dependent_RNA_polymerase
- Kingdom:
- euk
Quality
79.1
mean pLDDT
Taxonomy
Orthornavirae›
Duplornaviricota›
Chrymotiviricetes›
Ghabrivirales›
Chrysoviridae›
Betachrysovirus›
Alternaria_alternata_chrysovirus_1
TaxID: 2066695
Cluster
View cluster (12 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 34-62_119-144_185-208
Domain cluster:
representative
CATH (60)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2lciA00 | 3.40.50.11230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.76 | 66.0 | 5.56e-01 | 97.5% | 92.5% |
| 2xauA03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.70 | 50.0 | 3.81e-01 | 74.7% | 75.4% |
| 3hb0D00 | 3.40.50.12350 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.70 | 60.0 | 4.17e-01 | 94.9% | 100.0% |
| 6x50A03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.69 | 51.0 | 3.71e-01 | 77.2% | 51.9% |
| 2a3nA01 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.69 | 60.0 | 4.74e-01 | 97.5% | 74.1% |
| 1zghA01 | 3.40.50.170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain | 0.68 | 58.0 | 4.63e-01 | 97.5% | 89.1% |
| 2cb0A02 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.67 | 58.0 | 4.72e-01 | 97.5% | 78.3% |
| 3w5jA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.67 | 58.0 | 4.47e-01 | 100.0% | 79.9% |
| 1z5zB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.67 | 49.0 | 3.93e-01 | 77.2% | 64.5% |
| 1tllA01 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.67 | 59.0 | 4.60e-01 | 100.0% | 93.1% |
| 2rjnA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.67 | 57.0 | 4.86e-01 | 97.5% | 88.1% |
| 3knzA02 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.67 | 58.0 | 4.75e-01 | 97.5% | 80.8% |
| 5x5jA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.67 | 57.0 | 5.02e-01 | 96.2% | 96.6% |
| 3g68A02 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.66 | 56.0 | 4.67e-01 | 96.2% | 81.4% |
| 2f1rA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.65 | 55.0 | 4.52e-01 | 94.9% | 100.0% |
| 1pdoA00 | 3.40.50.510 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component | 0.65 | 56.0 | 4.77e-01 | 96.2% | 80.6% |
| 3hdgA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.65 | 55.0 | 4.80e-01 | 96.2% | 94.4% |
| 1tvmA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.65 | 55.0 | 5.22e-01 | 93.7% | 100.0% |
| 2z1dA01 | 3.40.50.11750 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HypD, alpha/beta domain 1 | 0.65 | 55.0 | 4.65e-01 | 97.5% | 70.9% |
| 2xdqB01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.65 | 51.0 | 4.19e-01 | 86.1% | 91.8% |
| 6oapA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.65 | 54.0 | 4.68e-01 | 94.9% | 94.5% |
| 5im4F00 | 3.40.50.510 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component | 0.64 | 55.0 | 4.69e-01 | 96.2% | 79.4% |
| 2ynmD01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.64 | 50.0 | 4.15e-01 | 86.1% | 90.5% |
| 3io3A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.64 | 52.0 | 3.81e-01 | 91.1% | 86.1% |
| 2rdmA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.64 | 55.0 | 4.80e-01 | 98.7% | 96.8% |
| 1d7aA00 | 3.40.50.1970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.64 | 56.0 | 4.47e-01 | 98.7% | 78.9% |
| 4gvpA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.64 | 54.0 | 4.07e-01 | 96.2% | 57.3% |
| 3fj1A01 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.64 | 55.0 | 4.18e-01 | 97.5% | 66.3% |
| 6abiA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.63 | 55.0 | 4.69e-01 | 100.0% | 88.1% |
| 3ilhA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.63 | 54.0 | 4.61e-01 | 97.5% | 94.7% |
| 4xltA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.63 | 53.0 | 4.59e-01 | 96.2% | 94.5% |
| 1gpmA01 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.62 | 52.0 | 3.97e-01 | 94.9% | 98.5% |
| 1dz3A00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.62 | 47.0 | 4.08e-01 | 81.0% | 87.0% |
| 3re1A01 | 3.40.50.10090 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.62 | 52.0 | 4.61e-01 | 96.2% | 95.1% |
| 2ynmC02 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.62 | 51.0 | 4.26e-01 | 91.1% | 85.6% |
| 2oqrA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.62 | 44.0 | 4.42e-01 | 75.9% | 100.0% |
| 2h0aA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.61 | 51.0 | 4.66e-01 | 96.2% | 88.4% |
| 2x7jA03 | 3.40.50.970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.58 | 45.0 | 3.47e-01 | 87.3% | 81.2% |
| 3hueA03 | 3.40.50.11080 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 48.0 | 4.58e-01 | 94.9% | 78.3% |
| 2odtX01 | 3.40.50.11370 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 48.0 | 4.40e-01 | 96.2% | 97.3% |
| 3pdiB01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.57 | 48.0 | 4.03e-01 | 97.5% | 82.1% |
| 1u14A00 | 3.90.950.10 | Alpha Beta › Alpha-Beta Complex › Maf protein › | 0.56 | 47.0 | 3.80e-01 | 100.0% | 98.2% |
| 1g19A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 46.0 | 3.43e-01 | 97.5% | 78.6% |
| 2pv7A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 45.0 | 3.71e-01 | 97.5% | 83.6% |
| 3fzvD02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.54 | 44.0 | 3.99e-01 | 92.4% | 85.3% |
| 4zs9A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.53 | 45.0 | 3.63e-01 | 96.2% | 81.1% |
| 4r0mB01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.53 | 43.0 | 2.79e-01 | 93.7% | 78.4% |
| 3ec3A01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 45.0 | 4.08e-01 | 100.0% | 84.8% |
| 5k2xA00 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.53 | 46.0 | 2.94e-01 | 98.7% | 74.6% |
| 2ozzA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.52 | 44.0 | 3.73e-01 | 96.2% | 73.4% |
| 2v84A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.52 | 43.0 | 3.48e-01 | 92.4% | 82.0% |
| 1mdbA02 | 3.40.50.980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 43.0 | 3.44e-01 | 94.9% | 70.1% |
| 3hn0A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.52 | 44.0 | 3.49e-01 | 97.5% | 54.4% |
| 4z9nA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.52 | 39.0 | 3.60e-01 | 79.7% | 67.0% |
| 3pp8A02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 42.0 | 3.34e-01 | 93.7% | 76.0% |
| 2heuB01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.52 | 45.0 | 3.57e-01 | 100.0% | 79.1% |
| 1im5A00 | 3.40.50.850 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like | 0.51 | 42.0 | 3.37e-01 | 96.2% | 100.0% |
| 1ofuX00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 45.0 | 3.89e-01 | 96.2% | 69.5% |
| 1qg8A00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.51 | 43.0 | 3.15e-01 | 98.7% | 45.8% |
| 2yxdA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 41.0 | 3.32e-01 | 96.2% | 82.7% |
ECOD (57)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3729997 | 2004.1.1.364 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD+Helicase_C | 0.71 | 56.0 | 3.43e-01 | 84.8% | 70.6% |
| 5010622 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.70 | 50.0 | 3.79e-01 | 75.9% | 56.8% |
| 4458099 | 2007.6.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › Ribosomal_S2 | 0.69 | 60.0 | 4.46e-01 | 97.5% | 58.5% |
| 3715963 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.68 | 50.0 | 3.73e-01 | 78.5% | 55.0% |
| 3386866 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.67 | 56.0 | 5.05e-01 | 94.9% | 100.0% |
| 4979824 | 2004.1.1.16 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf | 0.67 | 58.0 | 4.65e-01 | 97.5% | 83.7% |
| 4926812 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.67 | 49.0 | 3.49e-01 | 77.2% | 46.4% |
| 5075266 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.67 | 52.0 | 3.79e-01 | 86.1% | 87.4% |
| 4588727 | 2007.6.1.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS | 0.66 | 58.0 | 4.39e-01 | 97.5% | 65.3% |
| 1138366 | 2007.6.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain | 0.66 | 56.0 | 4.40e-01 | 96.2% | 66.3% |
| 5045020 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.66 | 50.0 | 3.46e-01 | 82.3% | 83.9% |
| 4972541 | 2010.1.1.3 ↗ | a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › EIIA-man | 0.66 | 56.0 | 4.75e-01 | 96.2% | 77.0% |
| 4393576 | 2007.1.12.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Type II 3-dehydroquinate dehydratase › Exonuc_VII_L | 0.65 | 55.0 | 3.88e-01 | 94.9% | 49.2% |
| 4980682 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.65 | 55.0 | 5.09e-01 | 96.2% | 90.5% |
| 4628425 | 2007.1.12.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Type II 3-dehydroquinate dehydratase › Exonuc_VII_L | 0.65 | 55.0 | 4.28e-01 | 94.9% | 73.1% |
| 4616971 | 2007.1.14.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Oxidored_nitro | 0.65 | 51.0 | 4.13e-01 | 86.1% | 87.1% |
| 3288686 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.65 | 54.0 | 4.59e-01 | 96.2% | 86.4% |
| 3967963 | 2007.6.1.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS | 0.65 | 55.0 | 4.14e-01 | 96.2% | 62.0% |
| 3284101 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.65 | 54.0 | 4.64e-01 | 96.2% | 88.1% |
| 3588399 | 2007.2.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Phosphotyrosine protein phosphatases I-like | 0.64 | 57.0 | 5.42e-01 | 100.0% | 95.7% |
| 4034176 | 2007.6.1.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS | 0.64 | 55.0 | 4.34e-01 | 97.5% | 76.4% |
| 3672327 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.64 | 56.0 | 4.60e-01 | 100.0% | 98.0% |
| 5081696 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.64 | 50.0 | 3.65e-01 | 87.3% | 87.2% |
| 4379578 | 7512.1.1.12 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_tran_28_C | 0.64 | 54.0 | 4.23e-01 | 100.0% | 74.7% |
| 5062993 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.64 | 53.0 | 4.73e-01 | 96.2% | 100.0% |
| 3797023 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.63 | 50.0 | 3.56e-01 | 86.1% | 76.4% |
| 3933477 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.63 | 45.0 | 3.57e-01 | 75.9% | 62.9% |
| 3278239 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.63 | 54.0 | 4.53e-01 | 96.2% | 87.9% |
| 5059726 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.63 | 50.0 | 3.65e-01 | 87.3% | 91.3% |
| 3879317 | 2003.1.1.79 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › ISPD_C | 0.63 | 54.0 | 4.36e-01 | 97.5% | 91.3% |
| 136089 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.63 | 54.0 | 4.62e-01 | 97.5% | 95.5% |
| 5074813 | 2003.1.11.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Formate/glycerate dehydrogenase catalytic domain-like › 2-Hacid_dh | 0.62 | 52.0 | 4.58e-01 | 96.2% | 90.4% |
| 3967833 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.62 | 53.0 | 4.49e-01 | 96.2% | 90.4% |
| 3667699 | 2007.9.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain | 0.62 | 53.0 | 4.43e-01 | 100.0% | 96.0% |
| 4593914 | 2007.1.3.16 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › KaiA_N | 0.62 | 52.0 | 4.25e-01 | 97.5% | 78.1% |
| 4071699 | 2007.1.14.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Oxidored_nitro | 0.61 | 52.0 | 4.38e-01 | 96.2% | 84.3% |
| 3725914 | 2003.1.1.67 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_10 | 0.61 | 50.0 | 3.48e-01 | 96.2% | 66.9% |
| 5009873 | 7512.1.1.3 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 | 0.60 | 52.0 | 4.07e-01 | 98.7% | 80.0% |
| 3991555 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.60 | 53.0 | 3.96e-01 | 96.2% | 71.1% |
| 3184945 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.58 | 40.0 | 2.82e-01 | 72.2% | 74.4% |
| 4002561 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.57 | 48.0 | 3.48e-01 | 93.7% | 80.0% |
| 3263621 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.57 | 50.0 | 3.66e-01 | 97.5% | 76.7% |
| 3487615 | 2003.1.10.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › Ins134_P3_kin_N | 0.56 | 39.0 | 3.67e-01 | 74.7% | 89.5% |
| 3374231 | 7512.1.1.17 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_90 | 0.56 | 47.0 | 3.62e-01 | 97.5% | 63.6% |
| 3961000 | 2003.1.1.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DapB_N | 0.55 | 44.0 | 3.74e-01 | 89.9% | 78.6% |
| 2816401 | 7523.1.1.1 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.55 | 43.0 | 3.88e-01 | 84.8% | 98.2% |
| 4881452 | 7523.1.1.8 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_1 | 0.55 | 40.0 | 4.32e-01 | 77.2% | 94.0% |
| 1549312 | 7523.1.1.15 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate | 0.54 | 45.0 | 3.33e-01 | 97.5% | 92.5% |
| 3599743 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 38.0 | 2.62e-01 | 78.5% | 52.9% |
| 1197227 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.52 | 45.0 | 4.07e-01 | 100.0% | 84.8% |
| 3397211 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.52 | 46.0 | 3.63e-01 | 100.0% | 85.9% |
| 3667775 | 2003.1.10.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain | 0.52 | 43.0 | 3.84e-01 | 94.9% | 91.7% |
| 3951001 | 7523.1.1.8 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_1 | 0.52 | 45.0 | 2.91e-01 | 100.0% | 75.7% |
| 4550193 | 7516.1.1.101 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_tranf_2_5 | 0.51 | 39.0 | 2.74e-01 | 83.5% | 67.5% |
| 4530645 | 2485.1.1.8 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Calsequestrin | 0.51 | 43.0 | 3.53e-01 | 100.0% | 68.8% |
| 1518766 | 7523.1.1.17 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › OpuAC | 0.50 | 37.0 | 3.45e-01 | 79.7% | 71.7% |
| 4029342 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.50 | 41.0 | 3.28e-01 | 92.4% | 92.4% |
D2
medium
residues 209-293
D3
medium
residues 294-443_597-609
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3vr4B04 | 1.10.1140.10 | Mainly Alpha › Orthogonal Bundle › Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3 › Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3 | 0.52 | 37.0 | 3.89e-01 | 73.6% | 98.7% |
D4
medium
residues 444-524_563-596_610-738
Domain cluster:
rep: hypothetical_protein_2__YP_009336713__Beihai_toti-like_virus_4__1922734__D167-187_213-323_360-427
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02123.22 best | RdRP_4 | 68.8 | 6.30e-19 | 53.3% | 26.7% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7qocA01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.52 | 23.0 | 2.66e-01 | 80.3% | 51.9% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3772920 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.70 | 67.0 | 6.18e-01 | 100.0% | 88.3% |
| 3691350 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.66 | 62.0 | 6.03e-01 | 100.0% | 94.4% |
| 4330406 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.65 | 62.0 | 5.30e-01 | 100.0% | 76.8% |
| 3792091 | 304.48.1.25 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RRM_4 | 0.63 | 53.0 | 4.69e-01 | 88.1% | 64.1% |
| 4930778 | 7014.1.1.2 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › TauE | 0.53 | 26.0 | 3.40e-01 | 90.2% | 84.0% |
| 3615476 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.51 | 49.0 | 4.39e-01 | 100.0% | 80.0% |
D5
medium
residues 525-562_910-992
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2nn4A00 | 1.10.287.760 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like | 0.59 | 24.0 | 3.25e-01 | 89.3% | 71.0% |
| 4m70B00 | 1.10.246.200 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain | 0.58 | 34.0 | 3.86e-01 | 82.6% | 76.9% |
| 3anwA01 | 1.20.58.1030 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 30.0 | 3.12e-01 | 76.0% | 54.0% |
| 1vw4501 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.54 | 38.0 | 3.16e-01 | 73.6% | 81.6% |
| 3keyA01 | 1.10.10.1080 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain | 0.53 | 33.0 | 3.81e-01 | 90.1% | 86.2% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4055608 | 3826.1.1.21 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › DUF986 | 0.52 | 25.0 | 3.08e-01 | 73.6% | 69.3% |
| 3261117 | 633.24.1.2 ↗ | alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain › DUF5601 | 0.50 | 32.0 | 3.50e-01 | 86.0% | 80.0% |
D6
medium
residues 739-798
D7
medium
residues 799-909
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5fzsA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.60 | 45.0 | 4.57e-01 | 96.4% | 82.2% |
| 6wb9201 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.59 | 46.0 | 3.44e-01 | 97.3% | 32.2% |
| 4u04A02 | 1.10.3290.10 | Mainly Alpha › Orthogonal Bundle › Fic-like fold › Fido-like domain | 0.56 | 47.0 | 3.77e-01 | 92.8% | 51.1% |
| 2a0uB01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.55 | 43.0 | 3.84e-01 | 83.8% | 72.5% |
| 6fdpA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.55 | 41.0 | 4.06e-01 | 96.4% | 73.3% |
| 1ug3A02 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.55 | 42.0 | 4.11e-01 | 83.8% | 89.8% |
| 7qihA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.54 | 41.0 | 4.33e-01 | 96.4% | 90.1% |
| 2xevB00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.53 | 42.0 | 4.07e-01 | 96.4% | 76.6% |
| 3qwwA03 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.52 | 43.0 | 3.62e-01 | 90.1% | 59.2% |
| 3jq0A00 | 1.25.40.390 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.52 | 45.0 | 3.01e-01 | 99.1% | 54.0% |
| 1yxrA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.52 | 33.0 | 3.91e-01 | 82.0% | 97.3% |
| 2yhcA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.51 | 43.0 | 3.54e-01 | 92.8% | 57.9% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3636208 | 109.4.1.210 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19 | 0.59 | 52.0 | 3.47e-01 | 97.3% | 39.1% |
| None | — | 0.57 | 43.0 | 3.23e-01 | 97.3% | 32.4% | |
| 3530477 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 49.0 | 4.24e-01 | 96.4% | 73.7% |
| 3676117 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 49.0 | 3.77e-01 | 98.2% | 85.7% |
| 3935426 | 109.4.1.791 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_17 | 0.56 | 37.0 | 3.95e-01 | 79.3% | 77.9% |
| 3435114 | 109.4.1.359 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Exo70_C | 0.55 | 45.0 | 3.71e-01 | 91.0% | 97.7% |
| 5001408 | 4995.1.1.0 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like | 0.55 | 42.0 | 4.35e-01 | 80.2% | 92.0% |
| 4820937 | 109.4.1.1264 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_16 | 0.54 | 47.0 | 2.89e-01 | 98.2% | 17.0% |
| 3435936 | 109.4.1.18 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPTA | 0.54 | 47.0 | 3.57e-01 | 97.3% | 61.5% |
| 3192772 | 109.4.1.133 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ChAPs | 0.54 | 41.0 | 2.76e-01 | 82.9% | 20.2% |
| 4017163 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 43.0 | 3.74e-01 | 87.4% | 61.8% |
| 3244358 | 3684.1.1.0 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like | 0.53 | 37.0 | 3.01e-01 | 72.1% | 54.3% |
| 3222789 | 109.4.1.192 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 | 0.52 | 44.0 | 3.36e-01 | 93.7% | 40.7% |
| 4180562 | 109.4.1.3477 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_10, TPR_14, TPR_16, TPR_19, HAT_Syf1_CNRKL1_C | 0.52 | 46.0 | 3.01e-01 | 98.2% | 24.3% |
| 3385292 | 109.4.1.1289 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30856 | 0.51 | 44.0 | 2.72e-01 | 100.0% | 47.3% |
| 4026893 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.50 | 39.0 | 3.24e-01 | 83.8% | 54.1% |
| 3973040 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.50 | 35.0 | 3.00e-01 | 71.2% | 55.1% |
| 3721580 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.50 | 41.0 | 3.14e-01 | 91.0% | 60.7% |