RNA-dependent_RNA_polymerase

Euk-Vir

Rhizophagus_diaphanum_mitovirus_1

RNA-dependent_RNA_polymerase__YP_009553678__Rhizophagus_diaphanum_mitovirus_1__2320183

Identity

59.8 mean pLDDT

Orthornavirae› Lenarviricota› Howeltoviricetes› Cryppavirales› Mitoviridae› Mitovirus› Rhizophagus_diaphanum_mitovirus_1

TaxID: 2320183

View cluster (26 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-144

PDB

D2 medium residues 192-267_311-362_415-450

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009272901__Fusarium_poae_mitovirus_4__1848153__D175-282_343-384

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05919.17 best	Mitovir_RNA_pol	38.6	9.80e-10	75.6%	20.9%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1lq9A00	3.30.70.100	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.51	28.0	3.34e-01	95.7%	77.7%
1mukA02	3.90.1850.10	Alpha Beta › Alpha-Beta Complex › RNA-directed RNA polymerase lambda-3 › RNA-directed RNA polymerase lambda-3	0.50	46.0	3.23e-01	100.0%	47.1%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3561564	3937.1.1.1 ↗	alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Connexin	0.53	40.0	3.50e-01	78.0%	94.3%
3765856	3937.1.1.1 ↗	alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Connexin	0.52	39.0	3.61e-01	78.0%	89.0%
3871099	3937.1.1.1 ↗	alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Connexin	0.52	39.0	3.38e-01	78.7%	78.1%
3798829	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.52	38.0	3.50e-01	78.0%	81.3%
4152428	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.51	43.0	3.35e-01	90.9%	68.2%
3919679	3937.1.1.1 ↗	alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Connexin	0.50	38.0	3.34e-01	78.0%	79.2%
3845971	3937.1.1.1 ↗	alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Connexin	0.50	38.0	3.40e-01	78.0%	93.3%

D3 medium residues 363-414_451-550

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009508056__Heterobasidion_partitivirus_15__1469908__D97-135_228-464

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05919.17 best	Mitovir_RNA_pol	125.0	6.10e-36	68.4%	20.1%
PF05919.17	Mitovir_RNA_pol	35.5	8.20e-09	34.2%	8.5%

D4 medium residues 551-679

PDB