←Back to structures

RNA-dependent_RNA_polymerase

Euk-Vir

Ustilaginoidea_virens_nonsegmented_virus_2

RNA-dependent_RNA_polymerase__YP_009553682__Ustilaginoidea_virens_nonsegmented_virus_2__2305465

Identity

Accession:
YP_009553682 ↗
Protein ID:
RNA-dependent_RNA_polymerase
Kingdom:
euk

Quality

68.6 mean pLDDT

Cluster

View cluster (51 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 94-200_259-275_377-413
PDB
D2 medium residues 276-321_645-710
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3d7iB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.58 35.0 3.78e-01 88.4% 69.4%
D3 medium residues 322-357_452-511_548-644
PDB
Domain cluster: rep: KR816341.1__AKQ06880.1__X__00021__D162-195_238-325
D4 medium residues 414-451_512-547
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2w00A02 3.90.640.50 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › 0.52 34.0 3.46e-01 82.4% 67.1%
1lucA00 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.52 39.0 2.54e-01 79.7% 37.7%
2hlyA00 3.10.550.10 Alpha Beta › Roll › Atu2299-like › Hypothetical protein Atu2299 0.52 38.0 2.89e-01 81.1% 87.3%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3470595 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.58 41.0 3.07e-01 74.3% 82.0%
3920955 5050.1.1.6 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › OATP 0.58 43.0 3.04e-01 81.1% 74.5%
3478703 192.29.1.24 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › TMEM237 0.55 39.0 2.96e-01 77.0% 84.6%
3358465 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 43.0 2.98e-01 100.0% 52.7%
4407220 3352.1.1.21 ↗ alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › DIE2_ALG10 0.51 38.0 2.42e-01 83.8% 90.6%
D5 medium residues 711-798
PDB