RNA-dependent_RNA_polymerase

Euk-Vir

Lates_calcarifer_birnavirus

RNA-dependent_RNA_polymerase__YP_010086266__Lates_calcarifer_birnavirus__2583366

Identity

71.7 mean pLDDT

Orthornavirae› Birnaviridae› Blosnavirus› Lates_calcarifer_birnavirus

TaxID: 2583366

View cluster (6 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 578-684

PDB

Domain cluster: rep: VP1_RNA-dependent_RNA_polymerase__NP_690839__Infectious_bursal_disease_virus__10995__D603-698

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF20488.4 best	Birna_VP1_thumb	156.2	9.50e-46	100.0%	65.3%

D2 medium residues 125-188

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04197.18 best	Birna_RdRp_palm	85.3	6.60e-24	100.0%	12.0%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3cqyB01	3.30.420.40	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain	0.67	45.0	3.25e-01	70.3%	26.6%
2pejA00	1.10.1200.210	Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Chaperonin-like RbcX	0.53	36.0	3.10e-01	71.9%	41.3%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3782787	632.11.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like	0.66	44.0	4.17e-01	70.3%	58.7%
5032400	3291.1.1.1 ↗	alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7	0.52	42.0	3.28e-01	95.3%	69.7%

D3 medium residues 189-251_330-350_395-512

PDB

Domain cluster: rep: VP1_RNA-dependent_RNA_polymerase__NP_690839__Infectious_bursal_disease_virus__10995__D189-259_308-337_421-491

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04197.18 best	Birna_RdRp_palm	222.2	2.20e-65	58.9%	22.2%
PF04197.18	Birna_RdRp_palm	55.0	9.90e-15	31.7%	11.7%

D4 medium residues 252-329

PDB

Domain cluster: rep: VP1_protein__YP_009177609__Tasmanian_aquabirnavirus__1721090__D257-307_434-450

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04197.18 best	Birna_RdRp_palm	112.7	3.20e-32	100.0%	15.2%

D5 medium residues 351-394_513-577

PDB

Domain cluster: rep: VP1_protein__YP_009177609__Tasmanian_aquabirnavirus__1721090__D358-396_515-582

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF20488.4 best	Birna_VP1_thumb	62.0	8.90e-17	50.5%	28.7%
PF04197.18	Birna_RdRp_palm	47.4	2.00e-12	49.5%	9.0%