RNA-dependent_RNA_polymerase

Euk-Vir

Amasya_cherry_disease-associated_mycovirus

RNA-dependent_RNA_polymerase__YP_138537__Amasya_cherry_disease-associated_mycovirus__284689

Identity

79.3 mean pLDDT

Orthornavirae› Pisuviricota› Duplopiviricetes› Durnavirales› Partitiviridae› Alphapartitivirus› Amasya_cherry_disease-associated_mycovirus

TaxID: 284689

View cluster (450 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 38-70_498-612

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_656506__Raphanus_sativus_cryptic_virus_1__348449__D32-57_444-535

D2 medium residues 22-37_71-91_113-134_257-278_324-397

PDB

Domain cluster: rep: putative_RNA-dependent_RNA_polymerase__YP_009508058__Heterobasidion_partitivirus_3__631431__D106-145_229-253_299-368

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1o6zA01	3.90.110.10	Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal	0.58	29.0	2.86e-01	72.3%	44.7%
1fp2A01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.51	24.0	3.00e-01	87.1%	68.8%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3544534	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.57	27.0	3.60e-01	97.4%	85.0%
3630610	106.1.1.0 ↗	alpha arrays › Globin-like › Globin-like › Globin-like	0.53	37.0	3.90e-01	71.0%	90.4%
3301908	101.1.2.281 ↗	alpha arrays › HTH › HTH › winged helix domain › Tfb2	0.51	24.0	2.97e-01	71.0%	69.5%

D3 medium residues 92-112_279-323_398-489

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009337040__Changjiang_tombus-like_virus_21__1922815__D1-47_99-181

D4 medium residues 135-170_185-256

PDB