RNA-dependent_RNA_polymerase

Euk-Vir

Fragaria_chiloensis_latent_virus

RNA-dependent_RNA_polymerase__YP_164802__Fragaria_chiloensis_latent_virus__255238

Identity

65.6 mean pLDDT

Orthornavirae› Kitrinoviricota› Alsuviricetes› Martellivirales› Bromoviridae› Ilarvirus› Fragaria_chiloensis_latent_virus

TaxID: 255238

Singleton — not in a non-trivial cluster

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 672-779

PDB

Domain cluster: rep: unnamed_protein_product__YP_009551615__Apple_necrotic_mosaic_virus__1779339__D279-324_677-773

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00978.27 best	RdRP_2	53.8	2.10e-14	88.0%	20.7%

D2 medium residues 312-391

PDB

Domain cluster: rep: replication-associated_polyprotein_2a__YP_009165997__Privet_ringspot_virus__2169960__D236-291

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00978.27 best	RdRP_2	54.2	1.60e-14	80.0%	14.5%

D3 medium residues 392-416_485-542_600-656

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009337040__Changjiang_tombus-like_virus_21__1922815__D1-47_99-181

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00978.27 best	RdRP_2	39.4	4.90e-10	46.4%	13.2%
PF00978.27	RdRP_2	51.2	1.30e-13	41.4%	12.3%

D4 medium residues 451-484_543-599

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009337432__Changjiang_tombus-like_virus_5__1922819__D23-82_137-181

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00978.27 best	RdRP_2	63.8	2.10e-17	62.6%	13.2%
PF00978.27	RdRP_2	39.7	4.20e-10	37.4%	7.7%