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RNA-dependent_RNA_polymerase
Euk-VirOlive_mild_mosaic_virus
RNA-dependent_RNA_polymerase__YP_224015__Olive_mild_mosaic_virus__295090
Identity
- Accession:
- YP_224015 ↗
- Protein ID:
- RNA-dependent_RNA_polymerase
- Kingdom:
- euk
Quality
83.8
mean pLDDT
Cluster
View cluster (58 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 572-697
Domain cluster:
rep: P95_replicase__YP_009259667__Pelargonium_leaf_curl_virus__35280__D527-559_693-852
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00998.29 best | RdRP_3 | 120.2 | 1.50e-34 | 100.0% | 26.8% |
D2
medium
residues 41-175
Domain cluster:
rep: replicase__YP_009037607__Moroccan_pepper_virus__208086__D159-283
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08500.17 best | Tombus_P33 | 52.8 | 8.00e-14 | 84.4% | 71.9% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2dofA00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.64 | 35.0 | 4.24e-01 | 79.3% | 82.4% |
| 1uaaA02 | 1.10.10.160 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.56 | 29.0 | 3.80e-01 | 88.1% | 91.9% |
| 2a3vB01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.55 | 32.0 | 3.68e-01 | 83.0% | 79.8% |
| 3bjdA01 | 1.10.1240.20 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Lytic transglycosylase, superhelical linker domain | 0.55 | 32.0 | 3.83e-01 | 76.3% | 87.5% |
| 4zi3D00 | 1.20.1520.10 | Mainly Alpha › Up-down Bundle › Adp-ribosylation factor-like protein 2-binding protein fold › ADP-ribosylation factor-like 2-binding protein, domain | 0.51 | 39.0 | 4.01e-01 | 79.3% | 96.1% |
| 2guzB00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.51 | 25.0 | 3.48e-01 | 86.7% | 96.9% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4996540 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.62 | 32.0 | 3.89e-01 | 79.3% | 76.5% |
| 3170802 | 101.1.1.133 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Vhr1 | 0.61 | 42.0 | 4.82e-01 | 97.0% | 100.0% |
| 3171699 | 101.1.1.133 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Vhr1 | 0.60 | 42.0 | 4.74e-01 | 97.0% | 97.0% |
| 5030164 | 101.11.1.0 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 | 0.56 | 30.0 | 4.02e-01 | 70.4% | 100.0% |
| 5036631 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.55 | 37.0 | 4.09e-01 | 86.7% | 85.7% |
| 3601089 | 650.1.1.0 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain | 0.54 | 29.0 | 3.61e-01 | 88.9% | 85.0% |
| 3699724 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.54 | 29.0 | 3.79e-01 | 88.1% | 97.1% |
| 3176026 | 610.2.1.0 ↗ | alpha arrays › ERP29 C domain-like › Helical domain of Sec23/24 › Helical domain of Sec23/24 | 0.54 | 35.0 | 3.77e-01 | 79.3% | 76.5% |
| 4609494 | 1197.1.1.1 ↗ | alpha bundles › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › G3P_acyltransf | 0.53 | 39.0 | 3.43e-01 | 76.3% | 52.3% |
| 3967708 | 179.1.1.1 ↗ | alpha bundles › CO dehydrogenase ISP C-domain like › CO dehydrogenase ISP C-domain like › CO dehydrogenase ISP C-domain like › Fer2_2 | 0.52 | 34.0 | 4.00e-01 | 83.7% | 97.8% |
| 4948274 | 164.1.1.1 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 | 0.52 | 29.0 | 3.68e-01 | 84.4% | 98.7% |
| 5011971 | 164.1.1.1 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 | 0.51 | 28.0 | 3.54e-01 | 72.6% | 90.0% |
| 5066382 | 164.1.1.1 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 | 0.51 | 30.0 | 3.56e-01 | 78.5% | 86.7% |
| 4934951 | 164.1.1.1 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 | 0.51 | 30.0 | 3.50e-01 | 76.3% | 84.4% |
| 4927512 | 164.1.1.1 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 | 0.51 | 29.0 | 3.51e-01 | 73.3% | 84.4% |
| 5075474 | 164.1.1.1 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 | 0.51 | 31.0 | 3.76e-01 | 81.5% | 100.0% |
D3
medium
residues 198-202_204-396_442-493
Domain cluster:
rep: hypothetical_protein_2__YP_009337688__Beihai_tombus-like_virus_7__1922728__D528-588_642-697_774-796
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00998.29 best | RdRP_3 | 199.7 | 1.10e-58 | 69.6% | 35.6% |
| PF00998.29 | RdRP_3 | 61.1 | 1.30e-16 | 21.2% | 10.7% |
D4
medium
residues 397-441_494-570
Domain cluster:
rep: hypothetical_protein_1__YP_009337274__Changjiang_tombus-like_virus_14__1922807__D158-196_253-344
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00998.29 best | RdRP_3 | 109.1 | 3.40e-31 | 65.6% | 16.1% |
| PF00998.29 | RdRP_3 | 63.9 | 1.80e-17 | 37.7% | 9.0% |