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RNA-dependent_RNA_polymerase
Euk-VirPotato_yellow_vein_virus
RNA-dependent_RNA_polymerase__YP_829128__Potato_yellow_vein_virus__103881
Identity
- Accession:
- YP_829128 ↗
- Protein ID:
- RNA-dependent_RNA_polymerase
- Kingdom:
- euk
Quality
87.3
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Alsuviricetes›
Martellivirales›
Closteroviridae›
Crinivirus›
Potato_yellow_vein_virus
TaxID: 103881
Cluster
View cluster (450 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 22-59_84-107_413-505
Domain cluster:
rep: RNA-dependent_RNA_polymerase,_partial__YP_001552324__Plum_bark_necrosis_stem_pitting-associated_virus__675077__D23-59_407-502
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00978.27 best | RdRP_2 | 44.2 | 1.80e-11 | 54.8% | 18.4% |
D2
medium
residues 60-83_108-237_279-332
Domain cluster:
rep: ORF1b__YP_001816770__Bean_yellow_disorder_virus__267970__D132-368
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00978.27 best | RdRP_2 | 81.2 | 1.00e-22 | 66.3% | 30.2% |
D3
medium
residues 238-278_333-412
Domain cluster:
rep: RNA_dependent_RNA_polymerase,_partial__YP_002364303__Grapevine_leafroll-associated_virus_10__367121__D252-284_355-434
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00978.27 best | RdRP_2 | 100.0 | 2.00e-28 | 66.9% | 17.7% |