←Back to structures

RNA-directed_RNA_polymerase

Euk-Vir

Homalodisca_vitripennis_reovirus

RNA-directed_RNA_polymerase__YP_002790884__Homalodisca_vitripennis_reovirus__411854

Identity

Accession:: YP_002790884 ↗
Protein ID:: RNA-directed_RNA_polymerase
Kingdom:: euk

Quality

62.2 mean pLDDT

Cluster

View cluster (29 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 106-202

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4n4nB00	3.90.640.100	Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 ›	0.61	28.0	3.58e-01	79.4%	75.0%
1dw9A02	3.30.1160.10	Alpha Beta › 2-Layer Sandwich › Cyanate Lyase; Chain: A, domain 2 › Cyanate lyase, C-terminal domain	0.51	23.0	2.72e-01	99.0%	55.9%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3957641	252.2.1.0 ↗	a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like	0.58	23.0	3.05e-01	74.2%	63.6%

D2 medium residues 3-71_209-232

PDB

D3 medium residues 395-461

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF27669.1 best	RNA-dir_pol_phytoreovirus	61.9	3.10e-17	100.0%	4.6%

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5isuA03	3.10.105.10	Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3	0.69	49.0	3.45e-01	76.1%	28.0%
1uiuA02	3.10.105.10	Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3	0.66	49.0	3.41e-01	80.6%	28.5%
7kz9A02	3.10.105.10	Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3	0.65	47.0	3.31e-01	76.1%	28.8%
6epyA01	3.10.105.10	Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3	0.63	47.0	3.18e-01	80.6%	27.3%
1ezjA01	1.10.287.320	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Viral phosphoprotein oligmorisation site domain	0.57	43.0	4.44e-01	80.6%	93.5%
3rqtA02	3.10.105.10	Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3	0.57	42.0	3.02e-01	80.6%	27.7%
4oevA03	3.10.105.10	Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3	0.53	41.0	2.99e-01	88.1%	31.8%
4m70I00	1.20.5.4130	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.52	42.0	3.55e-01	86.6%	62.0%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3711883	4177.1.1.0 ↗	alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like	0.59	46.0	3.43e-01	94.0%	88.4%
3988791	192.8.1.0 ↗	alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain	0.57	43.0	4.24e-01	79.1%	95.7%
5014863	3755.3.1.524 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › AI-2E_transport	0.52	42.0	2.89e-01	100.0%	22.9%

D4 medium residues 462-588_624-671_723-801

PDB

Domain cluster: representative

Pfam (3)

Accession	Name	Score	E-value	Q cov	HMM cov
PF27669.1 best	RNA-dir_pol_phytoreovirus	151.5	2.90e-44	50.0%	8.7%
PF27669.1	RNA-dir_pol_phytoreovirus	108.2	3.50e-31	33.1%	5.6%
PF27669.1	RNA-dir_pol_phytoreovirus	73.1	1.40e-20	20.1%	3.2%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2r7rA05	1.10.357.80	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 ›	0.77	53.0	6.27e-01	98.8%	98.3%
3mk7C01	6.10.280.130	Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.50	17.0	2.91e-01	93.7%	85.1%
5c9iD01	1.10.439.10	Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1	0.50	28.0	3.40e-01	86.6%	83.2%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4875416	304.48.1.13 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Flavi_NS5	0.65	58.0	4.98e-01	100.0%	61.2%
3273928	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.58	55.0	4.16e-01	100.0%	48.4%
None	—		0.57	53.0	3.93e-01	100.0%	41.9%
3792091	304.48.1.25 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RRM_4	0.56	44.0	3.94e-01	84.6%	58.6%
3923013	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.55	45.0	4.07e-01	88.6%	63.5%
3598902	304.48.1.0 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like	0.53	43.0	3.78e-01	84.6%	59.2%
4361688	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.53	50.0	4.31e-01	100.0%	68.0%
4218573	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.52	48.0	4.32e-01	100.0%	71.1%
3672527	2.1.1.0 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein	0.51	15.0	2.69e-01	80.3%	80.0%

D5 medium residues 672-722_802-924

PDB

D6 medium residues 989-1043

PDB

D7 medium residues 1044-1174

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF27669.1 best	RNA-dir_pol_phytoreovirus	120.4	7.10e-35	100.0%	9.0%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2o7gA00	1.10.1740.10	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif	0.53	27.0	3.22e-01	71.8%	71.6%

D8 medium residues 1175-1216_1319-1386

PDB