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RNA3,_partial

Euk-Vir

Emaravirus_toordali

RNA3,_partial__YP_009268864__Emaravirus_toordali__1980430

Identity

Accession:: YP_009268864 ↗
Protein ID:: RNA3,_partial
Kingdom:: euk

Quality

71.2 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Bunyaviricetes› Elliovirales› Fimoviridae› Emaravirus› Emaravirus_toordali

TaxID: 1980430

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 74-188

PDB

Domain cluster: rep: putative_nucleocapsid_protein__YP_010088067__Emaravirus_cordylinae__2099567__D59-133

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF25629.2 best	Fimo_NCAP	146.8	1.20e-42	100.0%	43.2%

D2 medium residues 189-282

PDB

Domain cluster: rep: putative_nucleocapsid_protein__YP_010088067__Emaravirus_cordylinae__2099567__D171-282

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF25629.2 best	Fimo_NCAP	149.6	1.60e-43	100.0%	34.6%

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2w0gA00	1.20.58.610	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cdc37, Hsp90 binding domain	0.60	40.0	3.68e-01	70.2%	80.6%
2i0mA02	1.20.58.220	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2	0.57	39.0	3.85e-01	70.2%	96.0%
2lvfA00	1.10.110.10	Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins	0.57	44.0	4.21e-01	85.1%	86.8%
2cazE00	1.20.1440.200	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Vps28 N-terminal domain	0.55	39.0	3.87e-01	74.5%	70.3%
1wu3I00	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.55	48.0	4.06e-01	100.0%	64.6%
2r5sA02	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.55	39.0	4.02e-01	78.7%	79.5%
3m03B00	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.54	38.0	3.85e-01	98.9%	72.6%
1e3pA02	1.10.10.400	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain	0.53	39.0	4.15e-01	83.0%	90.4%
4zqeA03	1.10.1740.10	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif	0.52	45.0	4.48e-01	91.5%	95.8%
2zb9A02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.52	39.0	3.45e-01	78.7%	79.7%
5jazA03	1.10.1740.10	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif	0.52	44.0	4.51e-01	91.5%	96.7%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3279303	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.59	46.0	3.38e-01	84.0%	58.5%
4323903	1002.1.1.1 ↗	alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel › CRCB	0.59	45.0	4.12e-01	84.0%	85.4%
3505833	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.57	44.0	3.60e-01	84.0%	78.4%
3279501	608.1.1.1 ↗	alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD	0.51	42.0	3.46e-01	92.6%	62.7%