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RNA_dependent_RNA_polymerase

Euk-Vir

Blueberry_virus_A

RNA_dependent_RNA_polymerase__YP_006638806__Blueberry_virus_A__1206566

Identity

Accession:
YP_006638806 ↗
Protein ID:
RNA_dependent_RNA_polymerase
Kingdom:
euk

Quality

76.4 mean pLDDT

Taxonomy

Orthornavirae› Kitrinoviricota› Alsuviricetes› Martellivirales› Closteroviridae› Bluvavirus› Blueberry_virus_A

TaxID: 1206566

Cluster

View cluster (450 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 335-416
PDB
Domain cluster: rep: RNA-dependent_RNA_polymerase,_partial__YP_009241367__Grapevine_leafroll-associated_virus_13__1815581__D413-491
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00978.27 best RdRP_2 49.2 5.30e-13 100.0% 18.2%
D2 medium residues 39-160_202-256
PDB
Domain cluster: rep: RdRp,_partial__YP_762622__Strawberry_chlorotic_fleck-associated_virus__399314__D41-159_203-257
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF00978.27 best RdRP_2 78.0 9.60e-22 67.8% 24.3%
PF00978.27 RdRP_2 28.2 1.30e-06 31.1% 11.6%
D3 medium residues 161-201_257-334
PDB
Domain cluster: rep: RdRp,_partial__YP_008858531__Carnation_yellow_fleck_virus__940280__D190-234_286-374
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00978.27 best RdRP_2 76.5 2.70e-21 66.4% 16.6%