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RNA_dependent_RNA_polymerase

Euk-Vir

Botrytis_cinerea_mitovirus_2

RNA_dependent_RNA_polymerase__YP_009182160__Botrytis_cinerea_mitovirus_2__1629665

Identity

Accession:
YP_009182160 ↗
Protein ID:
RNA_dependent_RNA_polymerase
Kingdom:
euk

Quality

82.2 mean pLDDT

Taxonomy

Orthornavirae› Lenarviricota› Howeltoviricetes› Cryppavirales› Mitoviridae› Unuamitovirus› Botrytis_cinerea_mitovirus_2

TaxID: 1629665

Cluster

View cluster (26 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 535-700
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1w99A01 1.20.190.10 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain 0.76 43.0 4.32e-01 99.4% 54.3%
2oduA02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.73 45.0 5.57e-01 97.6% 98.1%
2m6bA00 1.20.58.390 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain 0.72 39.0 4.12e-01 94.6% 58.0%
2c5iT00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.72 37.0 4.91e-01 87.3% 89.4%
4m70I00 1.20.5.4130 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.71 31.0 3.79e-01 78.3% 62.0%
1uurA01 1.20.58.240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › STAT; domain 1 0.71 46.0 5.59e-01 96.4% 99.1%
5jrcA00 1.20.58.2140 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 39.0 3.79e-01 100.0% 48.4%
1oxjA02 1.25.40.170 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Smaug, PHAT domain 0.68 32.0 3.98e-01 91.6% 68.8%
3fr3B02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.67 35.0 4.17e-01 94.6% 73.0%
3edvB01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 40.0 4.43e-01 92.8% 73.5%
4kb2A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.65 42.0 5.11e-01 95.8% 99.1%
2wzkA03 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.64 34.0 4.08e-01 94.6% 75.5%
6adqG01 1.20.120.80 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle 0.64 41.0 4.00e-01 100.0% 57.9%
1u5pA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 39.0 4.74e-01 95.2% 94.4%
1xlyA00 1.20.200.20 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › She2 domain 0.61 43.0 3.93e-01 72.3% 90.2%
2odvA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 39.0 4.61e-01 97.6% 97.3%
2optA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.59 29.0 3.08e-01 89.2% 50.7%
2hfiA00 1.20.120.440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like 0.59 32.0 3.65e-01 88.6% 69.9%
1s35A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 36.0 4.43e-01 95.8% 100.0%
1yc9A01 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.58 40.0 3.21e-01 70.5% 91.7%
4cqiA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 36.0 4.46e-01 91.6% 98.1%
2hxiB02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.57 28.0 3.11e-01 87.3% 56.0%
2e9xA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 33.0 3.76e-01 84.9% 75.0%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.56 26.0 3.33e-01 92.2% 76.1%
5azsC01 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.56 39.0 3.03e-01 70.5% 85.8%
5d18A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 37.0 3.46e-01 95.2% 55.0%
3q23A08 1.20.140.110 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.56 39.0 4.04e-01 70.5% 89.0%
3zciA00 1.20.58.1660 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 46.0 4.36e-01 100.0% 75.9%
7craA02 1.20.58.1480 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 31.0 4.01e-01 95.2% 100.0%
3geeA02 1.20.120.430 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › tRNA modification GTPase MnmE domain 2 0.54 38.0 3.87e-01 100.0% 72.0%
1qoyA00 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.53 47.0 3.91e-01 97.6% 96.4%
3ihuA02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.51 32.0 3.47e-01 84.9% 73.4%
1q16C01 1.20.950.20 Mainly Alpha › Up-down Bundle › Fumarate Reductase Cytochrome B subunit › Transmembrane di-heme cytochromes, Chain C 0.50 33.0 3.09e-01 95.8% 50.0%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3677692 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.71 40.0 4.23e-01 92.8% 61.4%
3245048 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.67 44.0 4.81e-01 99.4% 78.6%
3521044 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.65 41.0 4.94e-01 95.8% 94.5%
3804937 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.64 37.0 3.79e-01 83.7% 58.1%
4027949 604.3.1.11 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › DUF155 0.64 46.0 5.20e-01 100.0% 94.6%
3302214 109.4.1.2306 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF25999 0.64 41.0 3.88e-01 97.6% 54.1%
4474640 604.1.1.150 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF28954 0.64 45.0 5.16e-01 95.8% 96.0%
3577229 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.62 42.0 4.98e-01 97.0% 99.1%
3238390 3684.1.1.0 ↗ alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like 0.61 41.0 4.16e-01 98.8% 65.9%
3578489 109.4.1.87 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec6 0.61 42.0 4.04e-01 95.8% 61.1%
5054956 7064.1.1.0 ↗ alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 0.60 32.0 3.69e-01 91.0% 70.0%
3786142 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.59 42.0 4.22e-01 98.8% 72.1%
5073511 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.57 37.0 3.69e-01 95.2% 61.2%
3477262 3684.1.1.0 ↗ alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like 0.55 45.0 4.49e-01 98.8% 81.7%
4046724 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.55 36.0 3.77e-01 80.7% 71.3%
4001786 1203.1.2.1 ↗ alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 › ASD2 0.54 36.0 3.40e-01 95.8% 54.1%
3755434 207.1.1.208 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_4, LRR_8, LRR_9 0.53 44.0 2.84e-01 88.6% 35.4%
4957994 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.53 37.0 2.90e-01 83.7% 36.6%
4362095 1073.1.1.42 ↗ alpha arrays › Mitochondrial calcium uniporter (MCU) › Mitochondrial calcium uniporter (MCU) › Mitochondrial calcium uniporter (MCU) › EVC2_like 0.53 39.0 3.68e-01 75.9% 96.1%
3589119 1075.5.1.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter 0.53 38.0 3.34e-01 73.5% 71.8%
D2 medium residues 1-115
PDB
Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009465715__Erysiphe_necator_mitovirus_1__2052561__D5-113
D3 medium residues 132-158_251-280_299-380
PDB
Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009336518__Wenzhou_narna-like_virus_2__1923577__D318-359_395-457
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF05919.17 best Mitovir_RNA_pol 126.3 2.40e-36 59.0% 16.1%
PF05919.17 Mitovir_RNA_pol 42.1 8.40e-11 24.5% 6.2%
D4 medium residues 159-250
PDB
D5 medium residues 281-298_381-428
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05919.17 best Mitovir_RNA_pol 93.9 1.60e-26 95.5% 10.3%
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5cqgA04 3.30.70.2630 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.74 63.0 5.50e-01 100.0% 80.2%
3tzyA02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.72 54.0 5.32e-01 80.3% 95.7%
3d68A01 3.30.70.340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Metallocarboxypeptidase-like 0.68 56.0 5.01e-01 89.4% 87.0%
2bvfA03 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.67 53.0 3.79e-01 89.4% 45.2%
4pwuC00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.66 50.0 4.78e-01 81.8% 100.0%
4qbuA03 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.65 47.0 4.77e-01 77.3% 100.0%
1zpwX00 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 50.0 4.73e-01 86.4% 95.1%
1konA03 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.62 49.0 4.73e-01 86.4% 90.7%
1nxiA00 3.30.70.970 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RraB-like 0.61 46.0 3.75e-01 83.3% 68.2%
1wf1A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.61 43.0 3.97e-01 77.3% 83.3%
2rilA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 46.0 4.10e-01 83.3% 96.8%
7c51A01 3.30.70.2970 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function (DUF541), domain 2 0.60 44.0 3.80e-01 81.8% 100.0%
2kviA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.59 45.0 4.29e-01 83.3% 100.0%
1b04A02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.58 43.0 3.86e-01 81.8% 69.7%
1lfpA03 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.57 46.0 4.48e-01 89.4% 95.9%
1mt1B00 3.50.20.10 Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Pyruvoyl-Dependent Histidine Decarboxylase, subunit B 0.56 48.0 4.10e-01 100.0% 80.4%
1gmuA01 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.55 44.0 4.41e-01 87.9% 91.0%
2r7kA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.55 44.0 4.61e-01 98.5% 96.7%
2i5tA00 3.10.490.10 Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like 0.52 42.0 3.23e-01 92.4% 68.6%
1earA02 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.52 40.0 4.02e-01 87.9% 92.8%
2b9wA03 3.30.70.1990 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 37.0 3.47e-01 87.9% 97.9%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3810170 304.48.1.43 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Mitovir_RNA_pol 0.91 86.0 6.00e-01 100.0% 87.8%
3306901 304.48.1.43 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Mitovir_RNA_pol 0.90 85.0 6.13e-01 100.0% 84.8%
3336938 304.48.1.43 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Mitovir_RNA_pol 0.88 83.0 5.40e-01 100.0% 61.6%
3068775 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.80 71.0 5.00e-01 100.0% 69.5%
3927365 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.79 71.0 4.72e-01 100.0% 51.0%
3315278 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.76 60.0 4.93e-01 87.9% 77.6%
3593586 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.75 56.0 5.25e-01 80.3% 93.8%
3998503 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.74 55.0 5.00e-01 80.3% 93.3%
5030717 304.11.1.0 ↗ a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.72 58.0 5.38e-01 84.8% 97.5%
5022444 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.72 54.0 5.13e-01 81.8% 91.3%
3390198 304.7.1.1 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Propep_M14 0.71 57.0 5.25e-01 87.9% 90.6%
4976260 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.70 55.0 5.03e-01 84.8% 100.0%
5039174 304.7.1.0 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.70 49.0 5.17e-01 74.2% 100.0%
3404929 304.7.1.1 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Propep_M14 0.69 57.0 5.12e-01 90.9% 86.7%
4568770 304.56.1.2 ↗ a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.68 52.0 4.84e-01 83.3% 88.2%
3670856 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.68 50.0 4.45e-01 78.8% 83.2%
5040784 304.163.1.0 ↗ a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.68 49.0 5.43e-01 75.8% 100.0%
5007506 304.5.1.0 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.66 52.0 4.74e-01 83.3% 84.7%
5004165 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.66 52.0 5.14e-01 86.4% 100.0%
4678773 304.117.1.1 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.66 52.0 5.04e-01 86.4% 93.3%
5071792 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.65 48.0 4.66e-01 80.3% 93.3%
5036151 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.65 51.0 4.69e-01 89.4% 100.0%
4993179 304.4.1.1 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg 0.64 49.0 4.41e-01 84.8% 83.2%
5071628 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.64 52.0 5.13e-01 90.9% 100.0%
5022748 304.56.1.2 ↗ a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.64 48.0 4.36e-01 81.8% 88.9%
5024019 327.16.1.18 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Se_S_carrier 0.63 51.0 4.85e-01 90.9% 100.0%
4411830 304.28.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.62 50.0 4.48e-01 90.9% 97.9%
4070496 304.117.1.1 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.62 47.0 4.59e-01 84.8% 92.0%
4105300 304.8.1.5 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.60 52.0 4.59e-01 95.5% 95.8%
4206076 304.117.1.1 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.60 43.0 4.35e-01 77.3% 100.0%
3970277 376.1.1.134 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › NosL 0.59 51.0 4.93e-01 97.0% 94.7%
4156338 304.117.1.1 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.59 48.0 4.69e-01 90.9% 92.0%
3282305 4187.1.1.0 ↗ a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like 0.59 50.0 4.91e-01 93.9% 92.9%
3946828 304.11.1.0 ↗ a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.59 48.0 4.90e-01 90.9% 98.5%
D6 medium residues 429-534
PDB
Domain cluster: rep: RNA_dependent_RNA_polymerase__YP_009182163__Botrytis_cinerea_mitovirus_4__1629667__D438-532
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05919.17 best Mitovir_RNA_pol 41.4 1.40e-10 100.0% 21.3%