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RNA_dependent_RNA_polymerase

Euk-Vir

Penicillium_aurantiogriseum_totivirus_1

RNA_dependent_RNA_polymerase__YP_009212848__Penicillium_aurantiogriseum_totivirus_1__1755467

Identity

Accession:: YP_009212848 ↗
Protein ID:: RNA_dependent_RNA_polymerase
Kingdom:: euk

Quality

92.9 mean pLDDT

Cluster

View cluster (56 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-86

PDB

Domain cluster: rep: putative_RNA-dependent_RNA_polymerase__YP_009553478__Alternaria_arborescens_victorivirus_1__1728964__D3-76

D2 high residues 94-216

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009254736__Nigrospora_oryzae_victorivirus_1__1765736__D113-183_214-225

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02123.22 best	RdRP_4	23.2	4.40e-05	95.1%	23.0%

D3 medium residues 217-250_287-380_416-476

PDB

Domain cluster: rep: RNA-dependent_RNA-polymerase_-RdRp-__YP_004429254__Grapevine_Bulgarian_latent_virus__748667__D66-229_264-320

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02123.22 best	RdRP_4	89.4	3.70e-25	52.9%	20.6%
PF02123.22	RdRP_4	50.8	1.80e-13	32.8%	13.6%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1khvA04	6.10.140.320	Special › Helix non-globular › Helix Hairpins ›	0.73	23.0	4.25e-01	79.9%	98.1%
2a3vB01	1.10.150.130	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain	0.58	28.0	3.90e-01	73.5%	92.6%
1j09A05	1.10.10.350	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.52	27.0	3.56e-01	75.7%	92.9%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3928801	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.71	63.0	5.04e-01	93.1%	71.1%
3422064	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.69	62.0	4.81e-01	96.3%	68.4%
3598902	304.48.1.0 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like	0.66	52.0	4.09e-01	82.0%	53.9%
3997418	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.59	53.0	4.34e-01	95.8%	66.6%
5081699	186.1.1.4 ↗	alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4	0.57	27.0	3.74e-01	72.5%	91.1%
3708776	304.48.1.0 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like	0.53	45.0	3.71e-01	88.9%	71.1%
3871164	108.1.1.120 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand › PF27858	0.53	22.0	2.61e-01	84.1%	52.8%
4216527	563.1.1.1 ↗	alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP	0.53	28.0	3.51e-01	77.2%	84.5%
4977761	4995.1.1.1 ↗	alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2	0.52	23.0	3.22e-01	70.4%	84.4%
4984709	4995.1.1.1 ↗	alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2	0.51	22.0	3.20e-01	71.4%	90.0%

D4 medium residues 381-415_477-559

PDB

Domain cluster: rep: KR816341.1__AKQ06880.1__X__00021__D162-195_238-325

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02123.22 best	RdRP_4	77.2	1.80e-21	70.3%	17.6%

D5 medium residues 560-618

PDB

Domain cluster: rep: RNA_dependent_RNA_polymerase__YP_009508249__Aspergillus_foetidus_slow_virus_1__1087070__D571-625

D6 medium residues 619-659_712-744_790-825

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009272905__Fusarium_poae_victorivirus_1__1849535__D612-657_720-746_792-827

D7 medium residues 660-711

PDB

Domain cluster: rep: putative_RNA_dependent_RNA_polymerase__YP_009508253__Epichloe_festucae_virus_1__382962__D660-709