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RNA_ligase_2
Euk-VirAcanthamoeba_polyphaga_moumouvirus
RNA_ligase_2__YP_007354114__Acanthamoeba_polyphaga_moumouvirus__1269028
Identity
- Accession:
- YP_007354114 ↗
- Protein ID:
- RNA_ligase_2
- Kingdom:
- euk
Quality
72.6
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Imitervirales›
Mimiviridae›
Moumouvirus›
Acanthamoeba_polyphaga_moumouvirus
TaxID: 1269028
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 219-293
Domain cluster:
representative
CATH (46)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2id3A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.70 | 44.0 | 5.20e-01 | 93.3% | 98.0% |
| 1a41A02 | 1.20.120.380 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 | 0.70 | 53.0 | 4.90e-01 | 97.3% | 63.8% |
| 1a00B00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.69 | 60.0 | 4.87e-01 | 97.3% | 90.4% |
| 4zvaA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.69 | 60.0 | 4.81e-01 | 97.3% | 85.9% |
| 1urvA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.69 | 59.0 | 4.73e-01 | 97.3% | 89.0% |
| 3wfwA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.68 | 44.0 | 3.61e-01 | 70.7% | 35.5% |
| 1cg5B00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.67 | 59.0 | 4.83e-01 | 98.7% | 92.9% |
| 1gcvA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.67 | 58.0 | 4.76e-01 | 97.3% | 90.7% |
| 1hbgA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.67 | 56.0 | 4.61e-01 | 97.3% | 91.2% |
| 6wk3A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.66 | 58.0 | 4.71e-01 | 98.7% | 84.1% |
| 1gcvB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.65 | 55.0 | 4.65e-01 | 97.3% | 91.9% |
| 3ubcA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.64 | 56.0 | 4.67e-01 | 97.3% | 93.1% |
| 1yhuB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.64 | 57.0 | 4.63e-01 | 100.0% | 94.4% |
| 2c0kB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.64 | 56.0 | 4.51e-01 | 98.7% | 93.3% |
| 3c7jA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 43.0 | 4.07e-01 | 94.7% | 58.2% |
| 2wy4A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.62 | 53.0 | 4.42e-01 | 97.3% | 88.5% |
| 1cqxA01 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.62 | 54.0 | 4.37e-01 | 98.7% | 85.3% |
| 2gsvA00 | 6.10.140.40 | Special › Helix non-globular › Helix Hairpins › | 0.61 | 48.0 | 5.00e-01 | 92.0% | 95.5% |
| 1x42A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.61 | 48.0 | 4.70e-01 | 98.7% | 79.5% |
| 4akgA16 | 1.10.8.720 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Region D6 of dynein motor | 0.60 | 54.0 | 4.18e-01 | 100.0% | 55.2% |
| 7zviA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.60 | 49.0 | 4.25e-01 | 92.0% | 59.0% |
| 3fbzA01 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 51.0 | 4.65e-01 | 100.0% | 70.6% |
| 3k3uA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.60 | 49.0 | 4.09e-01 | 92.0% | 93.4% |
| 3cx5A02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.59 | 49.0 | 3.57e-01 | 93.3% | 66.4% |
| 1xdxA01 | 3.30.1140.40 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Tctex-1 | 0.59 | 51.0 | 4.70e-01 | 97.3% | 86.0% |
| 3hgtA00 | 3.40.50.12360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.59 | 43.0 | 2.96e-01 | 80.0% | 60.5% |
| 2vliB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 47.0 | 3.59e-01 | 86.7% | 60.1% |
| 3q5dA02 | 1.20.58.420 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP | 0.58 | 49.0 | 4.60e-01 | 98.7% | 82.5% |
| 1txuA01 | 1.10.246.120 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.58 | 49.0 | 4.67e-01 | 98.7% | 78.7% |
| 1f5oA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.57 | 48.0 | 3.95e-01 | 97.3% | 85.9% |
| 2q9rA01 | 1.20.1590.10 | Mainly Alpha › Up-down Bundle › YP_001051499.1 fold like › YP_001051499.1 domain like | 0.56 | 38.0 | 2.94e-01 | 72.0% | 54.9% |
| 1dj2A02 | 1.10.300.10 | Mainly Alpha › Orthogonal Bundle › Adenylosuccinate Synthetase, subunit A; domain 2 › Adenylosuccinate Synthetase, subunit A, domain 2 | 0.56 | 46.0 | 4.24e-01 | 93.3% | 90.9% |
| 3rrwB01 | 1.10.520.10 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › | 0.55 | 46.0 | 3.61e-01 | 98.7% | 58.2% |
| 2m7bA00 | 1.10.10.1920 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.55 | 45.0 | 4.48e-01 | 98.7% | 90.9% |
| 4gpkB01 | 1.25.40.1000 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.55 | 37.0 | 3.40e-01 | 100.0% | 52.5% |
| 2xrhA00 | 1.20.120.1430 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HP0721 helical bundle | 0.55 | 42.0 | 3.79e-01 | 90.7% | 61.0% |
| 5k29A00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.55 | 44.0 | 4.06e-01 | 90.7% | 68.0% |
| 4nleA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.54 | 42.0 | 4.24e-01 | 98.7% | 82.9% |
| 1ldjA03 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.54 | 45.0 | 4.03e-01 | 100.0% | 63.5% |
| 3f4mA00 | 1.20.1440.160 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like | 0.54 | 48.0 | 3.83e-01 | 100.0% | 74.0% |
| 2wzkA03 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.53 | 44.0 | 4.05e-01 | 100.0% | 69.1% |
| 1mhyG02 | 1.20.1280.30 | Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 2 | 0.52 | 37.0 | 3.75e-01 | 100.0% | 76.7% |
| 2guzA00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.52 | 40.0 | 4.13e-01 | 100.0% | 88.7% |
| 2v40A02 | 1.10.300.10 | Mainly Alpha › Orthogonal Bundle › Adenylosuccinate Synthetase, subunit A; domain 2 › Adenylosuccinate Synthetase, subunit A, domain 2 | 0.52 | 43.0 | 4.11e-01 | 94.7% | 90.9% |
| 2jbwA01 | 1.20.1440.110 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase | 0.51 | 41.0 | 3.73e-01 | 94.7% | 64.1% |
| 2fbnA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.51 | 36.0 | 2.80e-01 | 73.3% | 37.3% |
ECOD (52)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5002999 | 101.11.1.0 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 | 0.73 | 61.0 | 5.98e-01 | 100.0% | 85.0% |
| 3575378 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.71 | 59.0 | 5.44e-01 | 97.3% | 71.6% |
| 4196397 | 106.1.1.1 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Globin | 0.70 | 60.0 | 4.94e-01 | 97.3% | 91.4% |
| 50988 | 106.1.1.0 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like | 0.70 | 61.0 | 4.88e-01 | 97.3% | 90.4% |
| 4527464 | 633.24.1.5 ↗ | alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain › PF29080 | 0.69 | 63.0 | 5.78e-01 | 100.0% | 95.8% |
| 51190 | 106.1.1.0 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like | 0.69 | 59.0 | 4.71e-01 | 97.3% | 89.0% |
| 3536798 | 633.24.1.4 ↗ | alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain › RIN1 | 0.68 | 60.0 | 5.52e-01 | 100.0% | 84.0% |
| 3607562 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 50.0 | 5.12e-01 | 93.3% | 84.3% |
| 51101 | 106.1.1.0 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like | 0.68 | 59.0 | 4.84e-01 | 98.7% | 95.1% |
| 3659895 | 101.1.1.65 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 | 0.68 | 59.0 | 4.94e-01 | 98.7% | 56.2% |
| 3728444 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.68 | 56.0 | 5.04e-01 | 100.0% | 65.7% |
| 3170802 | 101.1.1.133 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Vhr1 | 0.68 | 57.0 | 5.32e-01 | 100.0% | 73.7% |
| 3994003 | 106.1.1.1 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Globin | 0.67 | 58.0 | 4.65e-01 | 100.0% | 86.9% |
| 5048577 | 621.1.1.0 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain | 0.67 | 58.0 | 5.72e-01 | 97.3% | 91.3% |
| 4158890 | 168.1.1.1 ↗ | alpha arrays › Sec7 domain › Sec7 domain › Sec7 domain › Sec7 | 0.67 | 60.0 | 4.35e-01 | 100.0% | 36.7% |
| 3478766 | 106.1.1.1 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Globin | 0.67 | 58.0 | 4.45e-01 | 97.3% | 77.7% |
| 5032595 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.67 | 58.0 | 3.54e-01 | 100.0% | 24.2% |
| 3845878 | 621.1.1.0 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain | 0.67 | 55.0 | 5.50e-01 | 100.0% | 92.0% |
| 3999743 | 106.1.1.1 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Globin | 0.66 | 57.0 | 4.51e-01 | 97.3% | 90.6% |
| 4594465 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.66 | 58.0 | 5.42e-01 | 98.7% | 80.0% |
| 3794203 | 101.11.1.0 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 | 0.66 | 54.0 | 5.22e-01 | 100.0% | 81.2% |
| 3680378 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 59.0 | 5.37e-01 | 100.0% | 91.0% |
| 144613 | 106.1.1.1 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Globin | 0.66 | 57.0 | 4.77e-01 | 97.3% | 93.1% |
| 3455148 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.65 | 55.0 | 4.08e-01 | 94.7% | 36.4% |
| 4249597 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.65 | 57.0 | 5.13e-01 | 100.0% | 70.5% |
| 3708809 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.64 | 49.0 | 5.13e-01 | 97.3% | 98.5% |
| 3297600 | 621.1.1.7 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › EMC6 | 0.64 | 55.0 | 5.11e-01 | 100.0% | 80.0% |
| 3792754 | 621.1.1.7 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › EMC6 | 0.63 | 55.0 | 4.74e-01 | 100.0% | 62.4% |
| 3176307 | 106.1.1.1 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Globin | 0.63 | 55.0 | 4.52e-01 | 98.7% | 88.6% |
| 4594071 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.63 | 56.0 | 5.36e-01 | 100.0% | 85.9% |
| 4116078 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.63 | 51.0 | 5.19e-01 | 100.0% | 93.3% |
| 3726619 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.63 | 53.0 | 4.00e-01 | 96.0% | 80.0% |
| 4283506 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.62 | 53.0 | 5.02e-01 | 100.0% | 81.1% |
| 3292 | 106.1.1.1 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Globin | 0.62 | 54.0 | 4.37e-01 | 98.7% | 85.3% |
| 4618102 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.61 | 50.0 | 4.97e-01 | 100.0% | 90.0% |
| 3787217 | 106.1.1.0 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like | 0.61 | 53.0 | 4.15e-01 | 100.0% | 90.9% |
| 4061700 | 101.1.1.312 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Ustilago_mating, Homeobox_KN | 0.60 | 45.0 | 3.65e-01 | 85.3% | 41.4% |
| 3822 | 604.4.1.1 ↗ | alpha bundles › Spectrin repeat-like › Alpha-hemoglobin stabilizing protein AHSP › Alpha-hemoglobin stabilizing protein AHSP › AHSP | 0.60 | 53.0 | 5.01e-01 | 100.0% | 87.8% |
| 3397095 | 515.1.1.1 ↗ | alpha arrays › Transcription factor STAT-4 N-domain › Transcription factor STAT-4 N-domain › Transcription factor STAT-4 N-domain › STAT_int | 0.59 | 51.0 | 4.42e-01 | 100.0% | 67.2% |
| 4012566 | 633.24.1.3 ↗ | alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain › DUF6594 | 0.59 | 46.0 | 4.69e-01 | 92.0% | 86.7% |
| 3987559 | 1075.1.2.16 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › DUF1430 | 0.58 | 50.0 | 3.37e-01 | 100.0% | 43.8% |
| 4213400 | 592.2.1.9 ↗ | alpha arrays › PWI domain-like › YugE-like › YugE-like › PP1_inhibitor | 0.58 | 46.0 | 4.56e-01 | 98.7% | 82.5% |
| 3438985 | 621.1.1.1 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › GBP_C | 0.58 | 49.0 | 3.60e-01 | 100.0% | 33.9% |
| 5021443 | 621.1.1.0 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain | 0.57 | 48.0 | 4.48e-01 | 100.0% | 80.0% |
| 5019219 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.56 | 47.0 | 3.14e-01 | 93.3% | 53.0% |
| 5001606 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.56 | 49.0 | 3.99e-01 | 100.0% | 92.4% |
| 2701013 | 109.4.1.17 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cullin | 0.54 | 44.0 | 4.45e-01 | 100.0% | 94.7% |
| 3386308 | 604.3.1.46 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › PF28048 | 0.53 | 44.0 | 4.17e-01 | 96.0% | 77.8% |
| 3172848 | 601.7.1.12 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › SWT1_3rd | 0.52 | 41.0 | 3.43e-01 | 86.7% | 82.6% |
| 4997392 | 3930.1.1.3 ↗ | alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase › RNA_helicase_helical | 0.52 | 36.0 | 2.97e-01 | 72.0% | 49.3% |
| 3965046 | 604.12.1.76 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › IspA | 0.51 | 41.0 | 4.22e-01 | 88.0% | 92.9% |
| 4949752 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.51 | 42.0 | 3.57e-01 | 97.3% | 82.2% |
D2
medium
residues 6-198
Domain cluster:
rep: Salt_Pond_R1_B_H2O_MG_scaffold_1_prodigal-single.1__X__X__00295__D161-347
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF09414.16 best | RNA_ligase | 52.7 | 8.40e-14 | 91.7% | 98.2% |
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3qwuA02 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.78 | 66.0 | 6.89e-01 | 99.0% | 95.6% |
| 4ckbA01 | 3.30.470.140 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › | 0.75 | 57.0 | 5.93e-01 | 99.5% | 83.7% |
| 6kduA02 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.74 | 70.0 | 6.34e-01 | 100.0% | 92.8% |
| 3ty5A01 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.73 | 69.0 | 5.72e-01 | 100.0% | 71.3% |
| 4glwA01 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.72 | 65.0 | 6.17e-01 | 95.3% | 94.6% |
| 6imjA01 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.71 | 65.0 | 6.58e-01 | 98.4% | 98.9% |
| 6rarI01 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.70 | 65.0 | 6.53e-01 | 98.4% | 97.9% |
| 2hivA02 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.67 | 63.0 | 6.22e-01 | 100.0% | 96.6% |
| 2cfmA02 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.66 | 61.0 | 6.05e-01 | 99.0% | 96.0% |
| 3kyhC01 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.64 | 60.0 | 5.57e-01 | 100.0% | 84.2% |
| 1s68A01 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.62 | 34.0 | 4.50e-01 | 100.0% | 93.0% |
| 1xk5A01 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.61 | 57.0 | 5.71e-01 | 100.0% | 97.5% |
| 1wibA00 | 3.30.1550.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein L11, N-terminal domain › Ribosomal protein L11/L12, N-terminal domain | 0.53 | 24.0 | 3.31e-01 | 87.0% | 85.9% |
| 2lw3A00 | 2.60.40.2880 | Mainly Beta › Sandwich › Immunoglobulin-like › MmpS1-5, C-terminal soluble domain | 0.50 | 20.0 | 2.79e-01 | 100.0% | 72.2% |
ECOD (51)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 193072 | 206.1.3.23 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RNA_ligase | 0.84 | 81.0 | 7.50e-01 | 100.0% | 93.2% |
| 3594981 | 206.1.3.23 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RNA_ligase | 0.81 | 77.0 | 6.56e-01 | 100.0% | 84.1% |
| 5003826 | 206.1.3.23 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RNA_ligase | 0.80 | 70.0 | 6.31e-01 | 100.0% | 69.6% |
| 5007422 | 206.1.3.23 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RNA_ligase | 0.80 | 69.0 | 6.23e-01 | 100.0% | 68.8% |
| 5070559 | 206.1.3.23 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RNA_ligase | 0.80 | 68.0 | 6.22e-01 | 100.0% | 70.8% |
| 4943522 | 206.1.3.23 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RNA_ligase | 0.79 | 69.0 | 6.60e-01 | 100.0% | 80.5% |
| 4962282 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.78 | 69.0 | 6.92e-01 | 100.0% | 91.3% |
| 1698226 | 206.1.3.23 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RNA_ligase | 0.77 | 70.0 | 6.93e-01 | 100.0% | 90.2% |
| 4157611 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.77 | 72.0 | 5.83e-01 | 100.0% | 68.9% |
| 3283832 | 206.1.3.28 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › PNKP_ligase | 0.76 | 71.0 | 5.41e-01 | 100.0% | 69.1% |
| 3255868 | 206.1.3.5 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_aden | 0.75 | 71.0 | 6.05e-01 | 100.0% | 92.3% |
| 4370321 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.74 | 70.0 | 5.57e-01 | 100.0% | 67.1% |
| 4323403 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.74 | 70.0 | 6.01e-01 | 100.0% | 75.9% |
| 3708389 | 206.1.3.24 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RNA_lig_T4_1 | 0.74 | 70.0 | 5.66e-01 | 100.0% | 60.0% |
| 4566687 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.74 | 70.0 | 5.76e-01 | 99.5% | 69.8% |
| 3270508 | 206.1.3.23 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RNA_ligase | 0.74 | 70.0 | 6.60e-01 | 100.0% | 84.7% |
| 4321612 | 206.1.3.5 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_aden | 0.74 | 70.0 | 6.30e-01 | 100.0% | 92.5% |
| 3594517 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.74 | 70.0 | 5.89e-01 | 100.0% | 68.2% |
| 4160539 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.74 | 69.0 | 5.63e-01 | 100.0% | 70.1% |
| 4463257 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.74 | 68.0 | 5.72e-01 | 99.5% | 74.7% |
| 4965274 | 206.1.3.5 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_aden | 0.73 | 69.0 | 5.70e-01 | 100.0% | 68.8% |
| 4160069 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.73 | 69.0 | 5.82e-01 | 100.0% | 73.2% |
| 4995764 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.73 | 69.0 | 6.45e-01 | 100.0% | 93.6% |
| 4668736 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.73 | 53.0 | 5.80e-01 | 100.0% | 88.7% |
| 4281635 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.73 | 69.0 | 5.69e-01 | 100.0% | 75.2% |
| 3840047 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.73 | 69.0 | 5.81e-01 | 100.0% | 72.3% |
| 5059763 | 206.1.3.5 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_aden | 0.73 | 69.0 | 6.31e-01 | 100.0% | 92.2% |
| 4541712 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.73 | 69.0 | 5.77e-01 | 100.0% | 73.2% |
| 3594967 | 206.1.3.70 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DUF7920 | 0.73 | 69.0 | 5.76e-01 | 100.0% | 67.8% |
| 4432215 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.73 | 69.0 | 5.76e-01 | 100.0% | 73.2% |
| 4143426 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.72 | 67.0 | 5.61e-01 | 99.0% | 73.4% |
| 4265994 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.72 | 68.0 | 5.73e-01 | 100.0% | 73.2% |
| 4468528 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.71 | 67.0 | 5.73e-01 | 100.0% | 72.7% |
| 5024218 | 206.1.3.23 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RNA_ligase | 0.71 | 67.0 | 5.57e-01 | 100.0% | 79.4% |
| 3278752 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.71 | 67.0 | 5.71e-01 | 99.5% | 72.9% |
| 7114 | 206.1.3.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_A_M | 0.71 | 66.0 | 6.21e-01 | 99.0% | 95.7% |
| 3476026 | 206.1.3.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_A_M | 0.70 | 66.0 | 5.82e-01 | 100.0% | 91.5% |
| 3315215 | 206.1.3.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_A_M | 0.69 | 65.0 | 6.09e-01 | 99.5% | 94.3% |
| 3580961 | 4095.1.1.3 ↗ | alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_M | 0.69 | 65.0 | 4.95e-01 | 100.0% | 51.0% |
| 3704759 | 206.1.3.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_A_M | 0.69 | 64.0 | 5.96e-01 | 100.0% | 84.6% |
| 3182465 | 206.1.3.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_A_M | 0.68 | 64.0 | 5.81e-01 | 100.0% | 88.2% |
| 4012824 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.68 | 64.0 | 5.92e-01 | 99.5% | 93.6% |
| 4009355 | 206.1.3.5 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_aden | 0.68 | 64.0 | 5.51e-01 | 100.0% | 70.3% |
| 3253455 | 4095.1.1.2 ↗ | alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_M+DNA_ligase_A_N | 0.68 | 64.0 | 4.76e-01 | 100.0% | 46.4% |
| 4600922 | 4095.1.1.0 ↗ | alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain | 0.67 | 63.0 | 4.77e-01 | 99.5% | 46.8% |
| 4495705 | 206.1.3.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_A_M | 0.67 | 63.0 | 5.93e-01 | 99.0% | 95.1% |
| 3701347 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.67 | 59.0 | 4.80e-01 | 100.0% | 52.6% |
| 3704365 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.67 | 59.0 | 5.65e-01 | 100.0% | 83.3% |
| 3716788 | 206.1.3.4 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › mRNA_cap_enzyme | 0.66 | 61.0 | 5.52e-01 | 100.0% | 74.2% |
| 3595473 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.65 | 57.0 | 5.44e-01 | 100.0% | 81.4% |
| 3593973 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.64 | 59.0 | 5.11e-01 | 100.0% | 69.2% |