RNA_polymerase-associated_protein

Euk-Vir

Akhmeta_virus

RNA_polymerase-associated_protein__YP_010085558__Akhmeta_virus__2200830

Identity

68.1 mean pLDDT

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Chitovirales› Poxviridae› Orthopoxvirus› Orthopoxvirus_akhmetapox

TaxID: 2200830

View cluster (28 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-97

PDB

D2 high residues 327-373

PDB

Domain cluster: rep: putative_H4L_protein__YP_010085770__Orthopoxvirus_Abatino__2478919__D329-377

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03294.20 best	Pox_Rap94	75.4	4.20e-21	100.0%	5.9%

D3 high residues 402-583

PDB

Domain cluster: rep: RNA_polymerase-associated_protein_RAP94__YP_009046135__Penguinpox_virus__648998__D394-584

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03294.20 best	Pox_Rap94	327.0	3.60e-97	100.0%	22.9%

D4 medium residues 104-120_240-294

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03294.20 best	Pox_Rap94	68.1	6.80e-19	79.2%	6.9%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2b6cA01	1.20.1660.10	Mainly Alpha › Up-down Bundle › ARM repeat fold › Hypothetical protein (EF3068)	0.58	44.0	3.82e-01	83.3%	59.5%
1tjcA00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.55	41.0	3.78e-01	80.6%	75.8%
2ddhA01	1.10.540.10	Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain	0.53	41.0	3.61e-01	87.5%	77.1%
2eh3A02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.51	39.0	3.38e-01	84.7%	81.1%
2zb9A02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.50	39.0	3.30e-01	88.9%	76.8%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3518227	109.4.1.362 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1,TPR_8	0.57	40.0	3.21e-01	75.0%	47.7%

D5 medium residues 121-239

PDB

D6 medium residues 639-794

PDB

Domain cluster: rep: RAP94_RNA_pol_assoc_protein__YP_008004477__Choristoneura_rosaceana_entomopoxvirus_L__1293539__D643-819

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03294.20 best	Pox_Rap94	250.5	4.80e-74	100.0%	19.4%