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RNA_polymerase_II_RPB5_subunit
Euk-VirPithovirus_sibericum
RNA_polymerase_II_RPB5_subunit__YP_009000933__Pithovirus_sibericum__1450746
Identity
- Accession:
- YP_009000933 ↗
- Protein ID:
- RNA_polymerase_II_RPB5_subunit
- Kingdom:
- euk
Quality
73.5
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Pimascovirales›
Pithoviridae›
Alphapithovirus›
Pithovirus_sibericum
TaxID: 1450746
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-137
D2
high
residues 141-224
Domain cluster:
rep: DNA-directed_RNA_polymerase_II_subunit_RPB5__YP_008052525__Phaeocystis_globosa_virus__251749__D146-209
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01191.25 best | RNA_pol_Rpb5_C | 62.8 | 2.80e-17 | 90.5% | 95.9% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1dzfA02 | 3.90.940.20 | Alpha Beta › Alpha-Beta Complex › Eukaryotic RPB6 RNA polymerase subunit › RPB5-like RNA polymerase subunit | 0.81 | 66.0 | 6.99e-01 | 91.7% | 98.6% |
| 3d2lA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.63 | 37.0 | 4.23e-01 | 94.0% | 79.4% |
| 4hrzB00 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 35.0 | 3.14e-01 | 94.0% | 43.9% |
| 3fc7A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.55 | 31.0 | 2.94e-01 | 94.0% | 45.0% |
| 4bwcA01 | 2.10.70.60 | Mainly Beta › Ribbon › Complement Module; domain 1 › Phospholipase B-like, domain 1 | 0.53 | 33.0 | 3.90e-01 | 88.1% | 98.1% |
| 3nqkA02 | 2.40.128.440 | Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14274, DUF4361 | 0.51 | 35.0 | 2.93e-01 | 71.4% | 79.4% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3596039 | 840.1.1.0 ↗ | a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit | 0.92 | 74.0 | 8.07e-01 | 89.3% | 100.0% |
| 3824571 | 840.1.1.1 ↗ | a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C | 0.91 | 75.0 | 7.94e-01 | 91.7% | 96.0% |
| 3607644 | 840.1.1.1 ↗ | a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C | 0.90 | 73.0 | 7.81e-01 | 91.7% | 97.3% |
| 4838977 | 840.1.1.1 ↗ | a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C | 0.87 | 72.0 | 7.56e-01 | 92.9% | 96.1% |
| 4600910 | 840.1.1.0 ↗ | a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit | 0.86 | 68.0 | 7.44e-01 | 89.3% | 100.0% |
| 4861748 | 840.1.1.1 ↗ | a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C | 0.86 | 69.0 | 7.50e-01 | 92.9% | 100.0% |
| 4253107 | 840.1.1.1 ↗ | a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C | 0.85 | 70.0 | 7.47e-01 | 94.0% | 100.0% |
| 3033324 | 840.1.1.1 ↗ | a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C | 0.82 | 65.0 | 6.97e-01 | 91.7% | 100.0% |
| 4134997 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.56 | 46.0 | 4.02e-01 | 89.3% | 73.6% |
| 5040614 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.55 | 45.0 | 3.98e-01 | 88.1% | 72.5% |
| 4567995 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.54 | 45.0 | 3.70e-01 | 90.5% | 80.7% |
| 4998370 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.54 | 39.0 | 2.82e-01 | 77.4% | 91.3% |
| 3183677 | 523.1.1.3 ↗ | a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › PF29994 | 0.53 | 36.0 | 3.32e-01 | 96.4% | 53.6% |
| 3694763 | 375.1.1.222 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF29994 | 0.53 | 36.0 | 3.08e-01 | 96.4% | 45.4% |
| 5005269 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.53 | 39.0 | 3.34e-01 | 98.8% | 47.9% |
| 3854465 | 283.2.1.8 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › PF29994 | 0.52 | 36.0 | 3.19e-01 | 96.4% | 50.0% |
| 5079898 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.52 | 43.0 | 3.73e-01 | 91.7% | 79.2% |