←Back to structures

RNA_polymerase_RPO147

Euk-Vir

Mythimna_separata_entomopoxvirus_L

RNA_polymerase_RPO147__YP_008003761__Mythimna_separata_entomopoxvirus_L__1293572

Identity

Accession:: YP_008003761 ↗
Protein ID:: RNA_polymerase_RPO147
Kingdom:: euk

Quality

78.6 mean pLDDT

Cluster

View cluster (32 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-71_200-271

PDB

Domain cluster: rep: putative_RNA_polymerase_largest_subunit__YP_009001703__Anomala_cuprea_entomopoxvirus__62099__D13-74_212-273

D2 high residues 73-198

PDB

Domain cluster: rep: DNA-directed_RNA_polymerase_II_largest_subunit__YP_010084808__Shrimp_hemocyte_iridescent_virus__2039780__D81-188

D3 high residues 476-588

PDB

Domain cluster: rep: putative_DNA_directed_RNA_polymerase_largest_subunit__YP_009052394__Aureococcus_anophagefferens_virus__1474867__D487-612

D4 high residues 596-736

PDB

Domain cluster: rep: DNA-directed_RNA_polymerase_147_kDa_polypeptide__YP_009329703__BeAn_58058_virus__67082__D598-725

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05000.23 best	RNA_pol_Rpb1_4	63.1	2.90e-17	75.9%	98.1%

CATH (18)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3h0gA05	1.10.132.30	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain	0.78	73.0	7.26e-01	100.0%	96.6%
2o5iN07	1.10.132.30	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain	0.78	62.0	6.74e-01	100.0%	100.0%
1dd5A01	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.63	47.0	5.25e-01	87.9%	100.0%
1sj8A02	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.61	40.0	4.27e-01	73.0%	75.4%
1sumB02	1.20.58.220	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2	0.61	37.0	3.99e-01	97.9%	70.3%
4kb2A01	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.61	45.0	5.10e-01	80.1%	100.0%
1wa8A00	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.57	32.0	3.81e-01	99.3%	78.8%
1z6oA00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.56	44.0	3.87e-01	84.4%	86.8%
1wcrA00	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.55	38.0	4.43e-01	78.7%	97.1%
5u56A02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.55	36.0	3.96e-01	76.6%	83.0%
2qywA00	1.20.58.400	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins	0.53	33.0	4.01e-01	73.0%	93.7%
1t72A02	1.20.58.220	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2	0.53	35.0	4.07e-01	76.6%	95.9%
4dlqA02	1.25.40.610	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.53	29.0	3.51e-01	72.3%	78.9%
2i0mA01	1.20.58.220	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2	0.53	35.0	3.98e-01	78.0%	89.6%
3ay5A01	1.20.1420.10	Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain	0.52	37.0	3.81e-01	97.2%	76.7%
1aj3A00	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.52	36.0	4.08e-01	77.3%	100.0%
1sumB01	1.20.58.220	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2	0.52	36.0	4.02e-01	78.7%	93.5%
2c5iT00	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.51	33.0	3.97e-01	77.3%	97.9%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4025413	4958.1.1.0 ↗	a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit	0.83	63.0	6.36e-01	100.0%	79.3%
5044572	310.2.1.0 ↗	a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF	0.66	47.0	5.37e-01	89.4%	100.0%
5027625	3457.1.1.1 ↗	alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Peptidase_A24	0.55	43.0	4.07e-01	92.9%	66.9%
3689578	5069.1.1.0 ↗	alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes	0.54	46.0	4.25e-01	92.2%	80.6%
3491111	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.54	37.0	4.29e-01	89.4%	98.0%
4656380	3755.4.1.24 ↗	alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › DUF2463	0.53	44.0	3.77e-01	89.4%	89.1%
5059534	1075.1.1.0 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain	0.53	44.0	3.70e-01	97.2%	53.5%
3460130	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.52	31.0	3.81e-01	88.7%	100.0%
3581267	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.51	32.0	3.93e-01	75.9%	98.9%
3919843	604.1.1.124 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_6	0.51	39.0	4.06e-01	80.1%	92.3%
3920337	604.1.1.142 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_SYNE1_2	0.51	36.0	3.94e-01	93.6%	88.7%
3171345	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.51	35.0	3.22e-01	78.0%	54.4%
3220229	604.1.1.1 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin	0.50	36.0	3.88e-01	79.4%	86.7%

D5 high residues 1007-1114

PDB

Domain cluster: rep: putative_RNA_polymerase_largest_subunit__YP_009001703__Anomala_cuprea_entomopoxvirus__62099__D1033-1131

D6 medium residues 296-459

PDB

Domain cluster: rep: LC680885.1__BDE75759.1__X__00221__D247-427

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00623.26 best	RNA_pol_Rpb1_2	84.5	1.50e-23	99.4%	94.6%

D7 medium residues 861-963

PDB

Domain cluster: rep: RNA_polymerase_subunit_RPO147_protein__YP_009143406__Raccoonpox_virus__10256__D846-917

D8 medium residues 982-1006_1120-1220

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3onrJ00	3.30.1660.10	Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin	0.56	26.0	3.40e-01	94.4%	79.4%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5053089	223.1.1.14 ↗	a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4	0.54	25.0	2.66e-01	78.6%	46.1%
4683054	309.1.1.16 ↗	a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16, Peptidase_M16_C, M16C_assoc, PreP_C	0.51	38.0	2.33e-01	79.4%	52.9%
4520709	304.117.1.1 ↗	a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg	0.51	32.0	3.82e-01	75.4%	98.8%