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RNA_polymerase_RPO147

Euk-Vir

Adoxophyes_honmai_entomopoxvirus_L

RNA_polymerase_RPO147__YP_008004022__Adoxophyes_honmai_entomopoxvirus_L__1293540

Identity

Accession:
YP_008004022 ↗
Protein ID:
RNA_polymerase_RPO147
Kingdom:
euk

Quality

77.6 mean pLDDT

Cluster

View cluster (32 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 70-203
PDB
Domain cluster: rep: DNA-directed_RNA_polymerase_II_largest_subunit__YP_010084808__Shrimp_hemocyte_iridescent_virus__2039780__D81-188
D2 high residues 232-289
PDB
D3 high residues 1018-1115
PDB
Domain cluster: rep: putative_RNA_polymerase_largest_subunit__YP_009001703__Anomala_cuprea_entomopoxvirus__62099__D1033-1131
D4 medium residues 7-66
PDB
D5 medium residues 291-322_389-476
PDB
Domain cluster: rep: DNA-dependent_RNA_polymerase_subunit_rpo147__YP_232980__Vaccinia_virus__10245__D277-311_370-443
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00623.26 best RNA_pol_Rpb1_2 65.1 1.30e-17 85.0% 48.8%
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1twfA03 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.96 78.0 8.56e-01 83.3% 100.0%
1ynjD04 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.95 78.0 7.17e-01 84.2% 100.0%
7eu1A01 1.10.274.100 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › RNA polymerase Rpb1, domain 3 0.92 83.0 7.75e-01 93.3% 96.5%
3hu1A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.82 58.0 6.43e-01 79.2% 90.6%
4ga6A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.79 53.0 6.37e-01 72.5% 100.0%
1wlfA01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.77 53.0 6.17e-01 74.2% 100.0%
3ougA00 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.76 54.0 5.75e-01 73.3% 82.1%
1cz4A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.76 55.0 6.24e-01 76.7% 97.8%
1qcsA01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.76 51.0 6.02e-01 70.0% 100.0%
1zc1A01 2.40.40.50 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › Ubiquitin fusion degradation protein UFD1, N-terminal domain 0.75 55.0 5.92e-01 75.8% 98.1%
2kqaA00 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.69 52.0 5.29e-01 79.2% 100.0%
3vpbA02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.64 37.0 4.71e-01 75.0% 100.0%
1hd5A00 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.62 48.0 3.98e-01 80.8% 93.2%
6dgiA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.61 35.0 4.52e-01 70.0% 100.0%
3dclA02 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.61 42.0 4.72e-01 70.8% 96.7%
2jysA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.60 40.0 4.53e-01 94.2% 90.1%
1mvpA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.57 44.0 4.56e-01 99.2% 85.7%
1v0fB03 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.53 36.0 4.12e-01 71.7% 100.0%
1wdeA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.51 41.0 3.69e-01 87.5% 84.5%
ECOD (92)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3596090 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.97 87.0 8.77e-01 92.5% 98.3%
5058903 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.97 92.0 7.57e-01 97.5% 98.9%
4948679 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.96 89.0 6.18e-01 95.0% 55.2%
3670775 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.96 87.0 8.77e-01 93.3% 97.5%
5081033 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.96 93.0 7.50e-01 99.2% 95.0%
4943460 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.96 88.0 7.35e-01 94.2% 96.8%
3698542 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.96 89.0 7.13e-01 95.0% 95.1%
3836120 275.1.1.1 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_2 0.96 86.0 7.07e-01 92.5% 100.0%
4026183 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.96 85.0 7.78e-01 91.7% 100.0%
3509068 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.96 82.0 6.63e-01 87.5% 91.5%
3360997 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.96 88.0 8.09e-01 94.2% 93.8%
3684523 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.96 87.0 8.57e-01 93.3% 93.6%
4886549 275.1.1.1 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_2 0.96 87.0 7.79e-01 93.3% 98.7%
4015760 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.95 85.0 6.96e-01 91.7% 96.9%
4129914 1.1.2.31 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2, RNA_pol_Rpb1_3 0.95 91.0 7.17e-01 98.3% 74.0%
3374701 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.95 87.0 7.39e-01 95.0% 95.6%
3966248 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.95 87.0 8.95e-01 95.0% 100.0%
1746098 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.94 85.0 7.43e-01 93.3% 92.9%
4890084 1.1.2.31 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2, RNA_pol_Rpb1_3 0.90 86.0 8.54e-01 97.5% 98.4%
2886100 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.89 83.0 6.93e-01 98.3% 88.1%
4887355 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.86 70.0 6.97e-01 84.2% 82.3%
2968637 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.85 76.0 6.68e-01 94.2% 100.0%
5037727 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.82 57.0 6.75e-01 73.3% 100.0%
3409396 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.82 59.0 6.28e-01 79.2% 83.8%
3486347 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.82 59.0 6.61e-01 76.7% 93.7%
3696793 1.1.2.11 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP 0.81 63.0 6.43e-01 80.0% 100.0%
5053172 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.81 56.0 6.64e-01 74.2% 100.0%
5074983 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.81 59.0 6.74e-01 76.7% 100.0%
4986590 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.81 56.0 6.62e-01 73.3% 100.0%
4991006 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.80 56.0 6.56e-01 75.0% 100.0%
4607187 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.80 57.0 6.43e-01 74.2% 92.6%
4977163 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.80 57.0 6.59e-01 75.8% 100.0%
5053174 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.80 56.0 6.40e-01 74.2% 95.6%
4108919 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.80 55.0 6.48e-01 73.3% 100.0%
5055583 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.79 55.0 6.47e-01 72.5% 100.0%
5045002 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.79 56.0 6.42e-01 78.3% 96.7%
5032396 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.79 56.0 6.17e-01 73.3% 97.0%
4488210 1.1.2.4 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.79 54.0 6.41e-01 75.8% 100.0%
5053173 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.79 57.0 6.40e-01 75.0% 96.8%
4027672 1.1.2.8 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › UFD1 0.78 58.0 6.18e-01 75.8% 91.4%
4024752 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.78 58.0 6.40e-01 79.2% 93.0%
3605376 1.1.2.8 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › UFD1 0.78 56.0 6.31e-01 74.2% 100.0%
3973129 1.13.1.0 ↗ beta barrels › cradle loop barrel › Arginine N-succinyltransferase alpha chain C-terminal domain › Arginine N-succinyltransferase alpha chain C-terminal domain 0.78 44.0 5.78e-01 70.0% 100.0%
5060583 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.78 54.0 6.33e-01 72.5% 100.0%
5060748 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.78 65.0 6.75e-01 86.7% 100.0%
5073963 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.78 54.0 6.29e-01 71.7% 100.0%
4346976 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.77 54.0 6.29e-01 74.2% 100.0%
4145927 1.1.2.6 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Asp_decarbox 0.77 55.0 5.30e-01 73.3% 65.2%
1141837 1.13.1.2 ↗ beta barrels › cradle loop barrel › Arginine N-succinyltransferase alpha chain C-terminal domain › Arginine N-succinyltransferase alpha chain C-terminal domain › PF29831 0.77 43.0 5.68e-01 70.8% 100.0%
33 1.1.2.15 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PEX-2N 0.77 53.0 6.17e-01 74.2% 100.0%
3183266 1.1.2.11 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP 0.77 64.0 6.23e-01 87.5% 100.0%
5056546 3349.1.1.3 ↗ a+b two layers › DNA polymerase D large subunit DP2 N-terminal domain › DNA polymerase D large subunit DP2 N-terminal domain › DNA polymerase D large subunit DP2 N-terminal domain › PolC_DP2_cat 0.77 65.0 4.20e-01 88.3% 38.5%
3748306 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.77 58.0 6.47e-01 77.5% 100.0%
3597196 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.77 56.0 6.32e-01 75.8% 100.0%
3187087 1.1.2.11 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP 0.77 62.0 6.16e-01 85.0% 100.0%
3927447 1.1.2.8 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › UFD1 0.77 56.0 5.91e-01 75.8% 93.6%
4639326 1.1.2.6 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Asp_decarbox 0.76 55.0 5.72e-01 73.3% 80.0%
3742498 1.1.2.22 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › IML1_N_fung 0.76 57.0 5.81e-01 76.7% 100.0%
3783660 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.76 55.0 6.05e-01 75.0% 92.0%
4669978 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.76 55.0 5.57e-01 74.2% 74.8%
1883479 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.76 55.0 6.32e-01 75.8% 98.9%
4122334 1.1.2.6 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Asp_decarbox 0.76 55.0 5.20e-01 74.2% 63.6%
4087090 1.1.2.6 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Asp_decarbox 0.76 55.0 5.25e-01 74.2% 65.9%
3309021 1.1.2.8 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › UFD1 0.76 55.0 5.76e-01 75.0% 99.1%
4485138 1.1.2.6 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Asp_decarbox 0.75 54.0 5.34e-01 73.3% 70.4%
4670243 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.75 55.0 5.98e-01 75.0% 100.0%
4245831 1.1.2.6 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Asp_decarbox 0.75 54.0 5.14e-01 74.2% 63.6%
4040376 1.1.2.6 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Asp_decarbox 0.75 54.0 5.29e-01 74.2% 68.5%
3427279 1.1.2.8 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › UFD1 0.74 55.0 4.76e-01 76.7% 63.9%
3406944 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.74 56.0 5.27e-01 77.5% 75.0%
4508340 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.74 56.0 6.04e-01 79.2% 90.5%
3477728 1.1.2.19 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › IML1_N 0.73 56.0 6.19e-01 78.3% 100.0%
3557903 1.1.2.19 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › IML1_N 0.73 56.0 6.23e-01 79.2% 100.0%
5030460 1.1.2.23 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PolC_DP2_cat 0.73 66.0 4.25e-01 95.0% 37.8%
3735360 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.73 56.0 5.83e-01 79.2% 99.1%
4954178 1.1.2.23 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PolC_DP2_cat 0.73 69.0 4.47e-01 100.0% 41.7%
3740563 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.73 55.0 6.14e-01 79.2% 100.0%
4961166 1.1.2.23 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PolC_DP2_cat 0.72 68.0 5.23e-01 99.2% 77.6%
4270657 1.1.2.26 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › N1_PEX6 0.72 53.0 6.01e-01 75.0% 100.0%
3274137 1.1.2.11 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP 0.71 63.0 6.27e-01 95.0% 100.0%
3646137 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.71 63.0 5.21e-01 94.2% 98.0%
4226301 3349.1.1.0 ↗ a+b two layers › DNA polymerase D large subunit DP2 N-terminal domain › DNA polymerase D large subunit DP2 N-terminal domain › DNA polymerase D large subunit DP2 N-terminal domain 0.71 64.0 4.10e-01 95.0% 38.4%
3643011 1.1.2.11 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP 0.70 61.0 5.93e-01 91.7% 100.0%
4498374 1.1.2.23 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PolC_DP2_cat 0.70 65.0 4.99e-01 98.3% 74.8%
3010131 1.1.2.9 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_1 0.70 53.0 5.57e-01 78.3% 98.1%
3357414 1.1.2.11 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP 0.69 61.0 5.96e-01 94.2% 100.0%
3688059 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.68 60.0 5.33e-01 93.3% 94.5%
4048983 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.68 51.0 5.39e-01 77.5% 100.0%
5013280 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 47.0 5.18e-01 70.0% 88.4%
2757010 1.1.1.4 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Spuma_A9PTase 0.60 40.0 4.54e-01 95.0% 88.2%
4216845 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.57 33.0 4.11e-01 72.5% 94.5%
4124780 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.56 33.0 4.04e-01 72.5% 94.5%
D6 medium residues 323-388
PDB
Domain cluster: rep: RNA_polymerase_subunit_RPO147__YP_009046131__Penguinpox_virus__648998__D309-369
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1j5yA02 3.30.1340.20 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › 3H domain 0.63 54.0 4.68e-01 100.0% 78.5%
1dr9A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 42.0 3.70e-01 71.2% 64.8%
1wyzA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.62 52.0 4.51e-01 100.0% 58.2%
4yrdA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 52.0 4.33e-01 100.0% 52.9%
2kp5A00 2.60.20.10 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins 0.61 52.0 4.74e-01 100.0% 71.4%
2hqvA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.59 47.0 3.57e-01 90.9% 71.5%
2e5eA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 40.0 3.56e-01 71.2% 62.4%
3gqqA00 2.70.50.40 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › GMP phosphodiesterase, delta subunit 0.57 48.0 3.68e-01 98.5% 89.8%
2qqkA01 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.57 49.0 4.13e-01 100.0% 62.4%
4umwA02 2.70.150.10 Mainly Beta › Distorted Sandwich › Calcium-transporting ATPase, cytoplasmic transduction domain A › Calcium-transporting ATPase, cytoplasmic transduction domain A 0.56 39.0 3.67e-01 100.0% 56.2%
1va0B02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.56 45.0 3.86e-01 98.5% 53.2%
1yd0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.55 44.0 4.11e-01 92.4% 74.2%
1r6zA03 2.170.260.10 Mainly Beta › Beta Complex › paz domain › paz domain 0.55 44.0 3.66e-01 92.4% 92.9%
1accA02 2.60.120.240 Mainly Beta › Sandwich › Jelly Rolls › Protective antigen, heptamerisation domain 0.55 47.0 3.44e-01 98.5% 75.9%
4gafB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 37.0 3.26e-01 72.7% 50.9%
1wfnA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 40.0 3.74e-01 81.8% 88.6%
4h3wA01 2.60.290.20 Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › Protein of unknown function (DUF4621), C-terminal domain 0.54 46.0 3.84e-01 100.0% 76.8%
5lznA00 3.10.20.360 Alpha Beta › Roll › Ubiquitin-like (UB roll) › CKK domain 0.54 46.0 3.92e-01 98.5% 63.1%
1o59A01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 43.0 3.37e-01 100.0% 89.8%
2xf1A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.52 39.0 3.28e-01 83.3% 68.0%
3bqjA01 2.40.510.10 Mainly Beta › Beta Barrel › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Positive stranded ssRNA viruses 0.52 41.0 3.12e-01 95.5% 92.3%
2xfaA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.51 37.0 3.11e-01 84.8% 86.7%
1m4iB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 42.0 3.13e-01 95.5% 52.3%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4887308 275.1.1.0 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 0.86 72.0 7.65e-01 98.5% 100.0%
3630549 4261.1.1.0 ↗ a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like 0.65 57.0 4.67e-01 100.0% 55.6%
3613669 4261.1.1.4 ↗ a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › Slowpoke_C 0.65 57.0 5.52e-01 100.0% 92.0%
1155182 4261.1.1.4 ↗ a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › Slowpoke_C 0.64 56.0 4.50e-01 100.0% 54.5%
3734729 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.62 53.0 3.70e-01 100.0% 63.7%
3665817 10.12.1.7 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Auxin_BP 0.61 49.0 4.25e-01 95.5% 56.2%
4219528 10.2.1.55 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › NPL 0.61 52.0 4.41e-01 100.0% 75.7%
3419533 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.60 51.0 3.43e-01 98.5% 40.4%
3627741 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.60 51.0 3.44e-01 98.5% 27.3%
3105960 1137.1.1.0 ↗ a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain 0.60 51.0 4.09e-01 100.0% 57.1%
3495040 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.59 50.0 3.13e-01 100.0% 39.3%
3466659 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.58 50.0 3.52e-01 100.0% 65.8%
3923894 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.58 51.0 3.92e-01 100.0% 60.8%
3598159 224.1.1.0 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like 0.58 44.0 3.62e-01 84.8% 92.2%
4960962 10.11.1.0 ↗ beta sandwiches › jelly-roll › Thiamin pyrophosphokinase, substrate-binding domain › Thiamin pyrophosphokinase, substrate-binding domain 0.58 49.0 4.60e-01 100.0% 82.4%
3889375 221.1.1.2 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.58 49.0 4.64e-01 100.0% 90.4%
3217657 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.58 50.0 4.11e-01 100.0% 59.2%
3536586 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.57 49.0 4.12e-01 100.0% 61.7%
3236327 10.4.1.21 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › DUF7591 0.57 49.0 4.18e-01 100.0% 60.0%
3592890 7516.1.1.0 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases 0.56 42.0 2.80e-01 84.8% 57.3%
5055065 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 45.0 4.38e-01 89.4% 86.7%
3228135 10.4.1.21 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › DUF7591 0.56 48.0 4.24e-01 100.0% 65.0%
3258411 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 50.0 4.17e-01 100.0% 68.7%
3212510 10.4.1.21 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › DUF7591 0.56 48.0 4.22e-01 100.0% 63.8%
3235640 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 48.0 4.07e-01 100.0% 64.3%
3214482 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.56 48.0 4.07e-01 100.0% 66.1%
3212671 10.32.1.236 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF7591 0.56 48.0 4.20e-01 100.0% 62.9%
3847173 10.12.1.110 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › OGFOD2-like 0.56 48.0 3.24e-01 100.0% 42.2%
3240517 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.56 48.0 4.18e-01 100.0% 62.9%
3899364 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 43.0 3.69e-01 87.9% 85.5%
4588568 331.3.1.45 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PF28462 0.54 44.0 3.10e-01 90.9% 54.9%
3592700 221.1.1.52 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_2 0.53 45.0 3.88e-01 100.0% 79.6%
3581509 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.53 45.0 3.81e-01 100.0% 61.7%
3262496 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 45.0 3.92e-01 98.5% 85.7%
3994191 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.52 44.0 4.14e-01 100.0% 89.4%
1161758 10.4.1.2 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › C3_CUB2 0.52 45.0 3.80e-01 98.5% 72.8%
4115792 10.12.1.16 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy 0.52 43.0 3.17e-01 100.0% 58.0%
3650711 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 42.0 4.09e-01 93.9% 97.3%
3624752 11.1.1.397 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DM13 0.51 40.0 3.35e-01 89.4% 86.4%
D7 medium residues 477-589
PDB
Domain cluster: rep: putative_DNA_directed_RNA_polymerase_largest_subunit__YP_009052394__Aureococcus_anophagefferens_virus__1474867__D487-612
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4c3iA04 1.10.274.100 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › RNA polymerase Rpb1, domain 3 0.87 83.0 7.19e-01 100.0% 95.0%
7oqyA01 1.10.274.100 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › RNA polymerase Rpb1, domain 3 0.87 82.0 7.37e-01 100.0% 95.3%
4qiwA04 1.10.274.100 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › RNA polymerase Rpb1, domain 3 0.86 80.0 6.71e-01 100.0% 80.9%
6f40A01 1.10.274.100 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › RNA polymerase Rpb1, domain 3 0.86 79.0 7.06e-01 97.3% 100.0%
1twfA05 1.10.274.100 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › RNA polymerase Rpb1, domain 3 0.85 80.0 7.14e-01 100.0% 88.2%
7eu1A02 1.10.132.30 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain 0.81 75.0 7.10e-01 100.0% 94.8%
3pe5A00 3.40.630.190 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein 0.61 44.0 3.27e-01 100.0% 30.7%
2vixA02 1.10.150.630 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.58 39.0 4.35e-01 91.2% 87.6%
3cesA03 1.10.10.1800 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG/GidA 0.54 31.0 3.33e-01 97.3% 65.2%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4801460 4959.1.1.1 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 0.95 91.0 8.88e-01 100.0% 93.4%
4933545 4959.1.1.1 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 0.89 85.0 7.88e-01 100.0% 96.3%
5054582 4959.1.1.1 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 0.89 84.0 7.76e-01 100.0% 93.6%
4979447 4959.1.1.0 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit 0.89 84.0 7.18e-01 100.0% 84.0%
4943461 4959.1.1.1 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 0.88 84.0 7.47e-01 100.0% 95.3%
4948679 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.88 83.0 5.79e-01 100.0% 37.1%
5048449 4959.1.1.1 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 0.88 83.0 7.24e-01 100.0% 88.7%
4938234 4959.1.1.1 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 0.88 83.0 7.64e-01 100.0% 87.1%
5040549 4959.1.1.1 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 0.88 83.0 7.17e-01 100.0% 89.1%
4936467 4959.1.1.1 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 0.88 83.0 7.25e-01 100.0% 95.0%
3592133 4959.1.1.1 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 0.87 83.0 6.78e-01 100.0% 95.8%
5000429 4959.1.1.0 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit 0.87 83.0 7.51e-01 100.0% 93.1%
5034276 4959.1.1.1 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 0.87 83.0 7.22e-01 100.0% 88.1%
4994701 4959.1.1.0 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit 0.87 83.0 7.39e-01 100.0% 95.3%
3414196 4959.1.1.1 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 0.87 83.0 7.05e-01 100.0% 95.9%
3483005 4959.1.1.1 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 0.87 83.0 6.98e-01 100.0% 94.9%
4012261 4959.1.1.0 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit 0.87 82.0 7.19e-01 100.0% 95.0%
3722538 4959.1.1.1 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 0.87 82.0 6.88e-01 100.0% 95.0%
3709289 4959.1.1.1 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 0.87 82.0 7.26e-01 100.0% 95.5%
3693563 4959.1.1.1 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 0.87 82.0 7.17e-01 100.0% 94.4%
3923417 4959.1.1.1 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 0.87 82.0 7.07e-01 100.0% 95.2%
2772083 4959.1.1.1 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 0.87 81.0 7.31e-01 100.0% 94.7%
3670781 4959.1.1.1 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 0.86 81.0 6.96e-01 100.0% 96.5%
5058904 4959.1.1.1 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 0.86 80.0 7.04e-01 98.2% 88.6%
5055714 4959.1.1.1 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 0.86 82.0 7.60e-01 99.1% 94.1%
4261866 4959.1.1.1 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 0.86 81.0 7.09e-01 100.0% 95.6%
5043376 4959.1.1.1 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 0.86 81.0 7.34e-01 100.0% 93.1%
4932734 4959.1.1.1 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 0.86 82.0 7.85e-01 100.0% 91.2%
4667658 4959.1.1.1 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 0.85 81.0 6.97e-01 100.0% 97.0%
4942642 4959.1.1.1 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 0.85 80.0 7.61e-01 100.0% 93.1%
4966694 4959.1.1.0 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit 0.85 71.0 6.65e-01 87.6% 92.6%
5028611 4959.1.1.1 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 0.84 78.0 6.96e-01 100.0% 92.9%
3642284 4959.1.1.1 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 0.83 78.0 7.39e-01 100.0% 96.2%
3834810 4959.1.1.1 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 0.83 77.0 7.25e-01 100.0% 94.1%
5023528 4959.1.1.1 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 0.82 77.0 6.36e-01 100.0% 89.5%
3237866 3265.1.1.1 ↗ alpha arrays › C-terminal helical domain in tRNA modifying enzyme GidA › C-terminal helical domain in tRNA modifying enzyme GidA › C-terminal helical domain in tRNA modifying enzyme GidA › GIDA_C_1st 0.62 34.0 3.86e-01 97.3% 69.4%
3326752 219.1.1.23 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › MINDY_DUB 0.52 42.0 3.28e-01 90.3% 90.9%
D8 medium residues 784-853
PDB
Domain cluster: rep: RNA_polymerase_subunit_RPO147_protein__YP_009143406__Raccoonpox_virus__10256__D790-845
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5tprA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.51 36.0 2.61e-01 75.7% 73.6%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4887311 4957.1.1.0 ↗ a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit 0.78 52.0 4.23e-01 74.3% 38.1%
D9 medium residues 854-943
PDB
Domain cluster: rep: RNA_polymerase_subunit_RPO147_protein__YP_009143406__Raccoonpox_virus__10256__D846-917
D10 medium residues 982-1017_1118-1195
PDB
Domain cluster: rep: RNA_polymerase_RPO147__YP_008003761__Mythimna_separata_entomopoxvirus_L__1293572__D982-1006_1120-1220