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RNA_polymerase_RPO18
Euk-VirChoristoneura_biennis_entomopoxvirus
RNA_polymerase_RPO18__YP_008004335__Choristoneura_biennis_entomopoxvirus__10288
Identity
- Accession:
- YP_008004335 ↗
- Protein ID:
- RNA_polymerase_RPO18
- Kingdom:
- euk
Quality
86.6
mean pLDDT
Cluster
View cluster (40 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-91
Domain cluster:
rep: putative_RNA_polymerase_subunit__YP_009001517__Anomala_cuprea_entomopoxvirus__62099__D13-92
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1y14D01 | 3.30.1490.120 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase Rpb7-like, N-terminal domain | 0.81 | 61.0 | 6.58e-01 | 92.0% | 94.5% |
| 1go3E02 | 3.30.1490.120 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase Rpb7-like, N-terminal domain | 0.75 | 61.0 | 6.34e-01 | 92.0% | 96.3% |
| 7d58G01 | 3.30.1490.120 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase Rpb7-like, N-terminal domain | 0.74 | 59.0 | 6.23e-01 | 88.5% | 100.0% |
| 3ayhB01 | 3.30.1490.120 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase Rpb7-like, N-terminal domain | 0.69 | 56.0 | 5.85e-01 | 92.0% | 98.7% |
| 3onrJ00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.61 | 42.0 | 4.62e-01 | 100.0% | 94.1% |
| 2vxaA00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.59 | 41.0 | 4.53e-01 | 100.0% | 97.0% |
| 2axyA00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.58 | 37.0 | 4.05e-01 | 86.2% | 79.2% |
| 3e56A00 | 6.20.180.10 | Special › Other non-globular › Ubiquitin-like (UB roll) › | 0.57 | 30.0 | 3.18e-01 | 82.8% | 57.3% |
| 4bbyA05 | 3.30.300.330 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.57 | 41.0 | 3.89e-01 | 100.0% | 62.0% |
| 3mcqA01 | 3.30.1330.10 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain | 0.56 | 44.0 | 3.88e-01 | 87.4% | 78.4% |
| 5ajiB03 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 39.0 | 3.86e-01 | 100.0% | 68.4% |
| 1we8A01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.55 | 36.0 | 3.71e-01 | 83.9% | 70.2% |
| 3tupA02 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.55 | 40.0 | 3.89e-01 | 97.7% | 70.8% |
| 3ku7A00 | 3.30.1070.10 | Alpha Beta › 2-Layer Sandwich › Cell Cycle; Chain A › Cell division topological specificity factor MinE | 0.54 | 36.0 | 4.00e-01 | 86.2% | 95.1% |
| 1vq8R00 | 3.90.470.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 | 0.52 | 40.0 | 3.48e-01 | 86.2% | 92.7% |
| 2cy5A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 40.0 | 3.54e-01 | 82.8% | 80.6% |
| 3udcA03 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 37.0 | 3.78e-01 | 100.0% | 76.1% |
| 4hvzA01 | 3.30.110.170 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Protein of unknown function (DUF541), domain 1 | 0.52 | 43.0 | 4.20e-01 | 100.0% | 100.0% |
| 1cwpA00 | 2.60.120.220 | Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain | 0.51 | 40.0 | 3.43e-01 | 87.4% | 91.3% |
| 4v19W00 | 3.90.470.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 | 0.50 | 42.0 | 3.52e-01 | 96.6% | 72.3% |
| 2mdaA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.50 | 35.0 | 3.42e-01 | 100.0% | 66.3% |
| 2weiA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.50 | 35.0 | 3.52e-01 | 100.0% | 71.1% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3698809 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.81 | 68.0 | 6.64e-01 | 90.8% | 100.0% |
| 4968745 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.80 | 65.0 | 6.95e-01 | 88.5% | 100.0% |
| 3390090 | 872.1.1.0 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like | 0.79 | 72.0 | 6.85e-01 | 100.0% | 85.0% |
| 3333647 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.79 | 64.0 | 6.79e-01 | 88.5% | 100.0% |
| 3355267 | 872.1.1.0 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like | 0.79 | 68.0 | 7.03e-01 | 98.9% | 100.0% |
| 4024173 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.78 | 63.0 | 6.73e-01 | 88.5% | 100.0% |
| 5042175 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.77 | 62.0 | 6.62e-01 | 88.5% | 100.0% |
| 4935852 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.77 | 62.0 | 6.55e-01 | 88.5% | 100.0% |
| 4002973 | 872.1.1.9 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › PF29479 | 0.77 | 70.0 | 6.76e-01 | 100.0% | 89.5% |
| 4026327 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.77 | 65.0 | 6.71e-01 | 92.0% | 98.8% |
| 3737377 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.77 | 62.0 | 6.58e-01 | 88.5% | 100.0% |
| 3349323 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.76 | 63.0 | 6.57e-01 | 89.7% | 100.0% |
| 4930726 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.76 | 60.0 | 6.43e-01 | 88.5% | 100.0% |
| 4945722 | 872.1.1.14 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › S1 | 0.75 | 59.0 | 6.32e-01 | 88.5% | 100.0% |
| 5022585 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.75 | 60.0 | 6.29e-01 | 87.4% | 100.0% |
| 166965 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.75 | 62.0 | 6.47e-01 | 92.0% | 100.0% |
| 5028399 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.74 | 58.0 | 6.20e-01 | 88.5% | 100.0% |
| 3425071 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.73 | 58.0 | 6.20e-01 | 88.5% | 100.0% |
| 3501878 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.73 | 58.0 | 6.11e-01 | 88.5% | 100.0% |
| 4927228 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.72 | 57.0 | 6.08e-01 | 94.3% | 100.0% |
| 5049826 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.72 | 57.0 | 6.03e-01 | 88.5% | 100.0% |
| 4933855 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.72 | 57.0 | 6.02e-01 | 95.4% | 100.0% |
| 1921523 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.72 | 65.0 | 5.82e-01 | 100.0% | 85.7% |
| 3929328 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.72 | 57.0 | 6.01e-01 | 88.5% | 100.0% |
| 3577483 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.71 | 58.0 | 5.93e-01 | 98.9% | 92.9% |
| 4937631 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.71 | 57.0 | 6.05e-01 | 88.5% | 100.0% |
| 4012123 | 872.1.1.0 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like | 0.70 | 50.0 | 5.55e-01 | 83.9% | 100.0% |
| 4956432 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.70 | 56.0 | 5.96e-01 | 88.5% | 100.0% |
| 3702711 | 872.1.1.0 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like | 0.70 | 58.0 | 5.81e-01 | 92.0% | 98.9% |
| 3600230 | 872.1.1.0 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like | 0.70 | 60.0 | 5.90e-01 | 95.4% | 96.8% |
| 143841 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.69 | 56.0 | 5.87e-01 | 92.0% | 100.0% |
| 3979231 | 872.1.1.4 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › DUF4312 | 0.58 | 50.0 | 4.95e-01 | 97.7% | 94.7% |
| 5017849 | 304.39.1.0 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain | 0.57 | 40.0 | 3.87e-01 | 100.0% | 64.0% |
| 4981037 | 304.39.1.1 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd | 0.57 | 40.0 | 4.00e-01 | 98.9% | 71.1% |
| 4109123 | 2484.1.1.27 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › SHS2_FTSA | 0.57 | 49.0 | 3.74e-01 | 96.6% | 56.2% |
| 4032204 | 2484.1.1.178 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › SHS2_FTSA+FtsA | 0.57 | 49.0 | 3.21e-01 | 96.6% | 30.6% |
| 5016876 | 304.39.1.1 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd | 0.57 | 40.0 | 3.82e-01 | 100.0% | 61.9% |
| 4435043 | 2484.1.1.178 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › SHS2_FTSA+FtsA | 0.57 | 49.0 | 3.21e-01 | 96.6% | 30.6% |
| 3339622 | 2003.1.5.342 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TYW2_N_2 | 0.55 | 43.0 | 3.24e-01 | 87.4% | 33.5% |
| 3723339 | 304.133.1.1 ↗ | a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL | 0.54 | 45.0 | 4.29e-01 | 97.7% | 99.1% |
| 4453871 | 304.18.1.1 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB | 0.54 | 40.0 | 3.97e-01 | 100.0% | 74.7% |
| 3685739 | 390.1.1.0 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like | 0.53 | 33.0 | 3.41e-01 | 88.5% | 63.5% |
| 3733530 | 304.133.1.0 ↗ | a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein | 0.53 | 45.0 | 4.48e-01 | 96.6% | 96.7% |
| 3365211 | 304.39.1.2 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Msl2-3_C | 0.52 | 41.0 | 4.34e-01 | 100.0% | 100.0% |
| 4613758 | 304.18.1.1 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB | 0.52 | 41.0 | 3.86e-01 | 100.0% | 71.6% |
| 4931836 | 2003.1.5.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Met_10 | 0.51 | 44.0 | 3.14e-01 | 96.6% | 31.6% |
| 3278878 | 304.18.1.0 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS | 0.51 | 42.0 | 3.99e-01 | 98.9% | 74.5% |
D2
high
residues 96-174